High-throughput creation and functional profiling of eukaryotic DNA sequence variant libraries using CRISPR/Cas9

Guo, X.; Chavez, A.; Tung, A.; Chan, Y.; Cecchi, R.; Lopez Garnier, S.; Kaas, C.; Kelsic, E.; Schubert, M.; DiCarlo, J.; Collins, J.; Church, G.

doi:10.1101/195776

bioRxiv · 10.1101/195776

High-throughput creation and functional profiling of eukaryotic DNA sequence variant libraries using CRISPR/Cas9

Guo, X.·Chavez, A.·Tung, A.·Chan, Y.·Cecchi, R.·Lopez Garnier, S.·Kaas, C.·Kelsic, E.·Schubert, M.·DiCarlo, J.·Collins, J.·Church, G.

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Abstract

Construction of genetic variant libraries with phenotypic measurement is central to advancing todays functional genomics, and remains a grand challenge. Here, we introduce a Cas9-based approach for generating pools of mutants with defined genetic alterations (deletions, substitutions and insertions), along with methods for tracking their fitness en masse. We demonstrate the utility of our approach in performing focused analysis of hundreds of mutants of a single protein and in investigating the biological function of an entire family of poorly characterized genetic elements. Our platform allows fundamental biology questions to be investigated in a quick, easy and affordable manner.

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Guo, X., Chavez, A., Tung, A., Chan, Y., Cecchi, R., Lopez Garnier, S., Kaas, C., Kelsic, E., Schubert, M., DiCarlo, J., Collins, J., Church, G.. 2017-09-29. High-throughput creation and functional profiling of eukaryotic DNA sequence variant libraries using CRISPR/Cas9. https://doi.org/10.1101/195776

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