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bioRxiv · 10.1101/849372

IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era

Minh, B. Q.·Schmidt, H.·Chernomor, O.·Schrempf, D.·Woodhams, M.·von Haeseler, A.·Lanfear, R.
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Abstract

IQ-TREE (http://www.iqtree.org) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.

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Minh, B. Q., Schmidt, H., Chernomor, O., Schrempf, D., Woodhams, M., von Haeseler, A., Lanfear, R.. 2019-11-21. IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. https://doi.org/10.1101/849372

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