Genomic analysis reveals shared genes and pathways in human and canine angiosarcoma

Megquier, K.; Turner-Maier, J.; Swofford, R.; Kim, J.-H.; Sarver, A. L.; Wang, C.; Sakthikumar, S.; Johnson, J.; Koltookian, M.; Lewellen, M.; Scott, M. C.; Graef, A. J.; Borst, L.; Tonomura, N.; Alfoldi, J.; Painter, C.; Thomas, R.; Karlsson, E. K.; Breen, M.; Modiano, J. F.; Elvers, I.; Lindblad-Toh, K.

doi:10.1101/570879

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bioRxiv · 10.1101/570879

Genomic analysis reveals shared genes and pathways in human and canine angiosarcoma

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Abstract

Angiosarcoma is a highly aggressive cancer of blood vessel-forming cells with high fatality and few effective treatment options. It is both rare and heterogenous, making large, well powered genomic studies nearly impossible. In dogs, angiosarcoma is common, with breeds like the golden retriever carrying heritable genetic factors that put them at very high risk. If the clinical similarity of canine and human angiosarcoma reflects shared genomic etiology, dogs could be a critically needed model for advancing angiosarcoma research. We assessed the genomic landscape of canine angiosarcoma via whole exome sequencing (47 golden retriever angiosarcomas) and RNA sequencing (74 angiosarcomas from multiple breeds). The predominant mutational signature was the age-associated deamination of cytosine to thymine, and somatic coding mutations occurred most frequently in the tumor suppressor TP53 (59.6% of cases) as well as two genes in the PI3K pathway: the oncogene PIK3CA (29.8%) and its regulatory subunit PIK3R1 (8.5%). We compared the canine data to human data recently released by The Angiosarcoma Project, and found the same genes and many of the same pathways significantly enriched for somatic mutations, most notably protein kinases, glycoproteins, fibronectin Type III domains, EGF-like domains, and cell adhesion proteins such as cadherins. As in human angiosarcoma, CDKN2A/B was recurrently deleted and VEGFA, KDR, and KIT recurrently gained. Canine angiosarcoma closely models human angiosarcoma on a genomic level, and is a powerful tool for investigating the pathogenesis of this devastating disease.

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Megquier, K., Turner-Maier, J., Swofford, R., Kim, J.-H., Sarver, A. L., Wang, C., Sakthikumar, S., Johnson, J., Koltookian, M., Lewellen, M., Scott, M. C., Graef, A. J., Borst, L., Tonomura, N., Alfoldi, J., Painter, C., Thomas, R., Karlsson, E. K., Breen, M., Modiano, J. F., Elvers, I., Lindblad-Toh, K.. 2019-03-08. Genomic analysis reveals shared genes and pathways in human and canine angiosarcoma. https://doi.org/10.1101/570879

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