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bioRxiv · 10.1101/406371

Trace-based correction of breathing-induced field fluctuations in T2*-weighted imaging of the spinal cord

Vannesjo, S. J.·Clare, S.·Kasper, L.·Tracey, I.·Miller, K. L.
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Abstract

PurposeSpinal cord MRI at ultra-high field is hampered by time-varying magnetic fields associated with the breathing cycle, giving rise to ghosting artifacts in multi-shot acquisitions. Here, we suggest a correction approach based on linking the signal from a respiratory bellows to field changes inside the spinal cord. The information is used to correct the data at the image reconstruction level.\n\nMethodsThe correction was demonstrated in the context of multi-shot T2*-weighted imaging of the cervical spinal cord at 7T. A respiratory trace was acquired during a high-resolution multi-echo gradient-echo sequence, used for structural imaging and quantitative T2* mapping, and a multi-shot EPI time series, as would be suitable for fMRI. The coupling between the trace and the breathing-induced fields was determined by a short calibration scan in each individual. Images were reconstructed with and without trace-based correction.\n\nResultsIn the multi-echo GRE, breathing-induced fields caused severe ghosting in the long echo time images, which led to a systematic underestimation of T2* in the spinal cord. The trace-based correction reduced the ghosting and increased the estimated T2* values. Breathing-related ghosting was also observed in the multi-shot EPI images. The correction largely removed the ghosting, thereby improving the temporal signal-to-noise ratio of the time series.\n\nConclusionsTrace-based retrospective correction of breathing-induced field variations can reduce ghosting and improve quantitative metrics in multi-shot structural and functional T2*-weighted imaging of the spinal cord. The method is straightforward to implement and does not rely on sequence modifications or additional hardware beyond a respiratory bellows.

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Vannesjo, S. J., Clare, S., Kasper, L., Tracey, I., Miller, K. L.. 2018-09-05. Trace-based correction of breathing-induced field fluctuations in T2*-weighted imaging of the spinal cord. https://doi.org/10.1101/406371

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