Label-free assessment of red blood cell storage lesions by deep learning

Doan, M.; Sebastian, J. A.; Pinto, P. N.; McQuin, C.; Goodman, A.; Wolkenhauer, O.; Parsons, M. J.; Acker, J. P.; Rees, P.; Hennig, H.; Kolios, M. C.; Carpenter, A. E.

doi:10.1101/256180

bioRxiv · 10.1101/256180

Label-free assessment of red blood cell storage lesions by deep learning

Doan, M.·Sebastian, J. A.·Pinto, P. N.·McQuin, C.·Goodman, A.·Wolkenhauer, O.·Parsons, M. J.·Acker, J. P.·Rees, P.·Hennig, H.·Kolios, M. C.·Carpenter, A. E.

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Abstract

Blood transfusion is a life-saving clinical procedure. With millions of units needed globally each year, it is a growing concern to improve product quality and recipient outcomes.\n\nStored red blood cells (RBCs) undergo continuous degradation, leading to structural and biochemical changes. To analyze RBC storage lesions, complex biochemical and biophysical assays are often employed.\n\nWe demonstrate that label-free imaging flow cytometry and deep learning can characterize RBC morphologies during 42-day storage, replacing the current practice of manually quantifying a blood smear from stored blood units. Based only on bright field and dark field images, our model achieved 90% accuracy in classifying six different RBC morphologies associated with storage lesions versus human-curated manual examination. A model fitted to the deep learning-extracted features revealed a pattern of morphological changes within the aging blood unit that allowed predicting the expiration date of stored blood using solely morphological assessment.\n\nDeep learning and label-free imaging flow cytometry could therefore be applied to reduce complex laboratory procedures and facilitate robust and objective characterization of blood samples.

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Doan, M., Sebastian, J. A., Pinto, P. N., McQuin, C., Goodman, A., Wolkenhauer, O., Parsons, M. J., Acker, J. P., Rees, P., Hennig, H., Kolios, M. C., Carpenter, A. E.. 2018-01-30. Label-free assessment of red blood cell storage lesions by deep learning. https://doi.org/10.1101/256180

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