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bioRxiv · 10.1101/2024.02.12.579694

The BioRECIPE Knowledge Representation Format

Holtzapple, E.·Luo, H.·Tang, D.·Zhou, G.·Arazkhani, N.·Hansen, C.·Telmer, C. A.·Miskov-Zivanov, N.
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Abstract

AO_SCPLOWBSTRACTC_SCPLOWThe BioRECIPE (Biological system Representation for Evaluation, Curation, Interoperability, Preserving, and Execution) knowledge representation format was introduced to facilitate seamless human-machine interaction while creating, verifying, evaluating, curating, and expanding executable models of intra- and intercellular signaling. This format allows a human user to easily preview and modify any model component, while it is at the same time readable by machines and can be processed by a suite of model development and analysis tools. The BioRECIPE format is compatible with multiple representation formats, natural language processing tools, modeling tools, and databases that are used by the systems biology community. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=117 SRC="FIGDIR/small/579694v1_ufig1.gif" ALT="Figure 1"> View larger version (38K): org.highwire.dtl.DTLVardef@76a130org.highwire.dtl.DTLVardef@505cb4org.highwire.dtl.DTLVardef@1f64e68org.highwire.dtl.DTLVardef@195bd03_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Holtzapple, E., Luo, H., Tang, D., Zhou, G., Arazkhani, N., Hansen, C., Telmer, C. A., Miskov-Zivanov, N.. 2024-02-12. The BioRECIPE Knowledge Representation Format. https://doi.org/10.1101/2024.02.12.579694

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