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bioRxiv · 10.1101/2023.04.06.535902

Sequence-encoded grammars determine material properties and physical aging of protein condensates

Alshareedah, I.·Borcherds, W. M.·Cohen, S. R.·Farag, M.·Singh, A.·Bremer, A.·Pappu, R. V.·Mittag, T.·Banerjee, P. R.
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Abstract

Biomolecular condensates are viscoelastic materials. Here, we report results from investigations into molecular-scale determinants of sequence-encoded and age-dependent viscoelasticity of condensates formed by prion-like low-complexity domains (PLCDs). The terminally viscous forms of PLCD condensates are Maxwell fluids. Measured viscoelastic moduli of these condensates are reproducible using a Rouse-Zimm model that accounts for the network-like organization engendered by reversible physical crosslinks among PLCDs in the dense phase. Measurements and computations show that the strengths of aromatic inter-sticker interactions determine the sequence-specific amplitudes of elastic and viscous moduli as well as the timescales over which elastic properties dominate. PLCD condensates also undergo physical aging on sequence-specific timescales. This is driven by mutations to spacer residues that weaken the metastability of terminally viscous phases. The aging of PLCD condensates is accompanied by disorder-to-order transitions, leading to the formation of non-fibrillar, beta-sheet-containing, semi-crystalline, terminally elastic, Kelvin-Voigt solids. Our results suggest that sequence grammars, which refer to the identities of stickers versus spacers in PLCDs, have evolved to afford control over the metastabilities of terminally viscous fluid phases of condensates. This selection can, in some cases, render barriers for conversion from metastable fluids to globally stable solids to be insurmountable on functionally relevant timescales.

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Alshareedah, I., Borcherds, W. M., Cohen, S. R., Farag, M., Singh, A., Bremer, A., Pappu, R. V., Mittag, T., Banerjee, P. R.. 2023-04-06. Sequence-encoded grammars determine material properties and physical aging of protein condensates. https://doi.org/10.1101/2023.04.06.535902

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