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bioRxiv · 10.1101/2021.10.21.465250

Habitat loss exacerbates pathogen spread: An Agent-based model of avian influenza infection in migratory waterfowl

Yin, S.·Xu, Y.·de Jong, M. C. M.·Huisman, M. R. S.·Contina, A.·Prins, H. H. T.·Huang, Z. Y. X.·de Boer, W. F.
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Abstract

Habitat availability determines the distribution of migratory waterfowl along their flyway, which further influences the transmission and spatial spread of avian influenza viruses (AIVs). The extensive habitat loss in the East Asian-Australasian Flyway (EAAF) may have potentially altered the virus transmission and spread, but those consequences are rarely studied. We constructed 6 fall migration networks that differed in their level of habitat loss, wherein an increase in habitat loss resulted in smaller networks with fewer sites. The networks were integrated with an agent-based model and a susceptible-infected-recovered model to simulate waterfowl migration and AIV transmission. We found that extensive habitat loss in the EAAF can 1) relocate the outbreaks northwards responding to the distribution changes of wintering waterfowl geese, 2) increase the outbreak risk in remaining sites due to larger bird congregations, and 3) facilitate AIV transmission among wintering geese. Our modelling output suggested that there was a certain system resilience of migration network to confront the site removal. In addition, the outputs were in line with the predictions from the concept of "migratory escape", affecting the pattern of infection prevalence in the waterfowl population. Our modelling shed light on the potential consequences of habitat loss in transmitting and spreading AIV at the flyway scale, and suggested the driving mechanisms behind these effects, advocating the importance of nature conservation in changing spatial and temporal patterns of AIV outbreak. Author summaryWhat are the possible consequences of extensive habitat loss on the transmission and spread of avian influenza viruses (AIVs)? We used a logistic regression model to select the suitable habitats of Greater white-fronted goose in the East Asian-Australasian Flyway and treated these habitats as sites to construct 6 fall migration networks that differed in their level of habitat loss (i.e., site removal). We then simulate geese migration in these networks, and explore the impacts of habitat loss on habitat connectivity and AIV transmission. We found the extensive habitat loss can cause relocation of the outbreaks and increase the outbreak risk and AIV transmission. Our modelling outputs suggested a certain network resilience to confront the site loss, and a "migratory escape" to change the spatial and temporal pattern of infection prevalence in the population. Overall, our study showed that land use changes and habitat loss can affect disease distribution and prevalence, suggested the importance of habitat conservation in changing the spatial and temporal pattern of AIVs transmission and spread.

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Yin, S., Xu, Y., de Jong, M. C. M., Huisman, M. R. S., Contina, A., Prins, H. H. T., Huang, Z. Y. X., de Boer, W. F.. 2021-10-22. Habitat loss exacerbates pathogen spread: An Agent-based model of avian influenza infection in migratory waterfowl. https://doi.org/10.1101/2021.10.21.465250

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