Biology subjects

Contina, A.

Publications and source records attributed to Contina, A..

3 recordsLinked to original sources

bioRxiv2021

abmR: an R package for agent-based model analysis of large-scale movements across taxa

O_LIAgent-based modeling (ABM) shows promise for animal movement studies. However, a robust, open-source, and spatially explicit ABM coding platform is currently lacking. C_LIO_LIWe present abmR, an R package for conducting continental-scale ABM simulations across animal taxa. The package features two movement functions, each of which relies on the Ornstein-Uhlenbeck (OU) process. C_LIO_LIThe theoretical background for abmR is discussed and the main functionalities are illustrated using example populations. C_LIO_LIPotential future additions to this open-source package may include the ability to specify multiple environmental variables or to model interactions between agents. Additionally, updates may offer opportunities for disease ecology and integration with other R movement modeling packages. C_LI

ecology↗

bioRxiv2021

A multiple hypotheses framework to study movement ecology and diet in a migratory songbird

Whether and how migratory organisms exhibit inter-individual behavioral and/or physiological variation across movement strategies remains an open question. The Dark-eyed Junco (Junco hyemalis) is a migratory songbird known for its intra-species variation displayed in relation to morphology, song repertoires, and migration. Thus, studies focusing on juncos can reveal how migratory strategy may covary with other individual-scale factors and, therefore, identify the selective forces driving intra-species variations throughout its distribution. We used Dark-eyed Junco hydrogen stable isotope feather values (delta2H) and implemented a Bayesian framework to infer the breeding and molting origin of migratory juncos captured on their winter grounds in Oklahoma, United States (U.S.). We modeled the distribution of feather hydrogen stable isotope values as a function of five morphological variables including body mass and fat deposition measured in Oklahoma during the winter. We then investigated the trade-off between longer and more energetically costly migration strategies in relation to diet preferences through carbon (delta13C) and nitrogen (delta15N) stable isotope analysis from feather values. Dark-eyed Juncos wintering in south central U.S. likely originate from multiple breeding populations in northern U.S. and Canada. Body condition at the wintering ground (e.g., mass) had no effect on feather hydrogen stable isotope abundance. However, we found a positive correlation between nitrogen and hydrogen stable isotopes, suggesting that a trophic level shift towards insect consumption might occur in individuals migrating from southern latitudes. Increased insect-derived protein consumption might be explained by reduced fatty-acid reserves necessary to complete a shorter migratory journey.

ecology↗

bioRxiv2021

A tail of plumage colouration: disentangling geographic, seasonal, and dietary effects on plumage colour in a migratory songbird

Plumage ornamentation in birds serves critical inter- and intra-sexual signaling functions. While carotenoid-based plumage colouration is often viewed as a classic condition-dependent sexually selected trait, plumage colouration can be influenced by a wide array of both intrinsic and extrinsic factors. Understanding the mechanisms underlying variation in colouration is especially important for species where the signaling function of ornamental traits is complex or the literature conflicting. Here, we examined variation in the yellow/orange tail feathers of American redstarts (Setophaga ruticilla) passing through two migratory stopover sites in eastern North America during both spring and fall migration to assess the role of geographic variation and seasonality in influencing feather colouration. In addition, we investigated whether diet during moult (inferred via stable isotope analysis of feather {delta}15N and {delta}13C) influenced plumage colouration. Our findings indicate that geographic variation, season, and diet all influence individual differences in American redstart colouration, represented by both traditional and tetrahedral colour variables. The extent to which these factors influence colour expression however is largely dependent on the colour metric under study, likely because different colour metrics reflect different attributes of the feather (e.g., structural components vs. pigment deposition). The effects of diet ({delta}15N) and season were pronounced for brightness, suggesting a strong effect of diet and feather wear/degradation on feather structure. Though hue, a metric that should strongly reflect pigment deposition, also changed from spring to fall, that effect was dependent on age, with only adults experiencing a reduction in ornamentation. Taken together, our results highlight the numerous sources of variation behind plumage coloration and underscores the difficulty of unraveling complex visual signaling systems, such as those in American redstarts.

ecology↗