Biology subjects

van Gemert, G.-J.

Publications and source records attributed to van Gemert, G.-J..

13 recordsLinked to original sources

bioRxiv2026

A silent intergenic locus for efficient and versatile transgene expression in Plasmodium falciparum

Genetically modified Plasmodium falciparum parasites expressing transgenes such as fluorescent markers are crucial tools for malaria research. However, current reporter lines often rely on integrated transgene constructs that disrupt the coding sequence of a native gene, potentially affecting progression in the life cycle of the tool parasite line. We identified six candidate Silent Intergenic Loci (SILs): putatively editable intergenic regions without transcriptional activity, where gene insertions occurred in P. falciparum after its divergence from Plasmodium berghei and Plasmodium vivax. We characterised the largest candidate SIL on chromosome 12, SIL12, by integration of a constitutively expressed cytosolic mScarlet reporter. The resulting PfRed12 parasites progressed normally throughout the life cycle, from asexual blood-stage replication to mosquito stages and subsequent liver infection. Importantly, they infected both Anopheles stephensi and Anopheles coluzzii mosquitoes. PfRed12 parasites displayed bright fluorescence in both blood and mosquito stages, making them well suited for live visualisation of parasite transmission. In addition, we used two CRISPR-Cas9 target sites in the mScarlet cassette, one of which we purposely added, to perform efficient re-editing of the transgene. As a proof of concept, we re-edited PfRed12 parasites and integrated an apicoplast metabolic bypass construct, an inducible gametocyte producer construct, and two mNeonGreen reporter constructs. Together, our findings demonstrate that SIL12 permits stable transgene expression without compromising parasite development throughout the life cycle. We established PfRed12 as a new reporter line to study blood- and mosquito-stage development and as a versatile parental line for further genetic engineering.

microbiology↗

bioRxiv2026

Controlled human infection with Plasmodium falciparum-infected mosquito bites elicits antibodies against mosquito salivary protein SG1L3

Human malaria infections begin with the injection of Plasmodium sporozoites via mosquito saliva. Whole sporozoite immunizations have been used as a model to study immune responses to malaria parasites, having culminated in circumsporozoite protein (CSP)-targeting vaccines and monoclonal antibodies (mAbs). However, antibody responses targeting non-CSP antigens on the sporozoite surface remain poorly characterized. Here, we isolated single B cells from a human volunteer immunized by Plasmodium falciparum-infected mosquito bites, who had acquired non-CSP-specific antibodies that recognize sporozoites. We identified two mAbs that recognize the surface of P. falciparum sporozoites, but do not bind to CSP. Using immunoprecipitation followed by mass-spectrometry, we found that the target of these mAbs is not a P. falciparum protein but the mosquito salivary protein SG1L3. We observed that recombinant SG1L3 binds to P. falciparum sporozoites. However, the SG1L3-specific mAbs and SG1L3-specific polyclonal antibodies from this volunteer, as well as polyclonal antibodies raised against recombinant SG1L3 in rabbits, fail to block liver stage infection in vitro, making this an unlikely target for functional antibodies. We observed that inhabitants from an area with intense Anopheles exposure in Burkina Faso can have antibodies against SG1L3, and that antibody titers increase with age. In conclusion, we identified the first human mAbs against a mosquito saliva protein that binds to the surface of sporozoites. Future work should assess whether naturally acquired antibodies against this protein may be used as a serological marker of mosquito exposure.

microbiology↗

bioRxiv2026

Deep behavioral phenotyping of pathogen infected mosquitoes reveals species-specific behavior changes enhancing transmission

Mosquito-borne pathogens are often proposed to alter mosquito behavior to enhance transmission, yet the prevalence, magnitude, and consequences of such effects remain unclear. Using custom high- throughput behavioral assays and deep-learning analysis, we quantified the blood-feeding behavior of more than 5,000 mosquitoes, and long-term activity patterns of more than 1,000 mosquitoes across six clinically relevant mosquito-pathogen combinations. Infection effects were highly species-specific. Anopheles stephensi infected with an African Plasmodium falciparum strain showed elevated flight activity throughout infection, an increased tendency to blood-feed upon host contact, and prolonged feeding times. In contrast, infection with an Asian P. falciparum strain or P. vivax had little impact on An. stephensi behavior. We detected no behavioral changes associated with P. falciparum infection in Anopheles gambiae s.s. or Anopheles coluzzii. Interestingly, dengue virus infection in Aedes aegypti increased landing, probing, and engorgement rates. Together, these results demonstrate that infection-induced behavioral change is not a general phenomenon among mosquito-borne pathogens, yet differs markedly per mosquito and pathogen species. A transmission model parameterized with our data showed that even modest behavioral shifts can substantially increase transmission, underscoring the potential epidemiological importance of subtle phenotypic shifts.

animal behavior and cognition↗

bioRxiv2026

Quantifying sporozoite inoculum dynamics with the SpitGrid reveals temporal decay and behavioral determinants of Plasmodium transmission

The number of Plasmodium sporozoites expelled by an infected mosquito during a bite, the inoculum size, is a critical but rarely measured factor in transmission. Its temporal dynamics, individual variation, and behavioral underpinnings remain poorly understood. To address this, we developed the SpitGrid, a modular platform that supports natural probing and feeding on artificial substrates, while enabling behavioral characterization combined with non-lethal, sensitive measurement of inoculum size for individual mosquitoes in high-throughput. Using the SpitGrid, we determined inoculum size of Plasmodium falciparum-infected Anopheles stephensi mosquitoes over time and identified a robust temporal structure. Inoculum size peaked shortly after the extrinsic incubation period, and declined approximately log-linearly post peak. Salivary gland parasite load decreased only moderately and was positively associated with inoculum size during the early phase of sporozoite expelling, yet explained only part of the variation observed in inoculum size. Fine-grained behavioral classification confirmed that probing alone can deliver substantial inocula, and revealed that probing more often increased inoculum size while the duration of probing, or if this led to feeding, had little effect. Application of the SpitGrid to Plasmodium vivax-infected mosquitoes similarly showed a temporally structured expelling profile, with generally smaller inocula and a higher proportion of non-expelling mosquitoes. Our observations reveal that Plasmodium infectivity in mosquitoes is a highly dynamics process, challenging the assumption that per-bite transmission potential remains constant over time. We establish the SpitGrid as a flexible tool to gain a nuanced understanding of the determinants of transmission, refine epidemiological models, and evaluate the efficacy of vector- based interventions under biologically relevant conditions. HighlightsWe develop the SpitGrid, a flexible, accessible, low-cost and animal free platform to measure sporozoite expelling We identify a peak in P. falciparum and P. vivax sporozoite expelling by infected Anopheles stephensi mosquitoes early after completion of the extrinsic incubation period, followed by a gradual decline We confirm a correlation between salivary gland load and inoculum size that weakens over time, indicating that a smaller fraction of the remaining salivary gland load is being expelled by older mosquitoes We confirm that mosquito probing alone can deliver substantial sporozoite inoculum independently of a successful bloodmeal By dissecting the behavioral parameters that determine inoculum size, we observe that the initiation of probing is a major determinant of inoculum size with relatively minor roles for probing time and whether biting results in engorgement Compared to P. falciparum, we observe comparatively smaller inocula, in P. vivax-infected mosquitoes a higher rate of non-expellers and similar albeit more moderate temporal structure with an earlier onset of expelling, illustrating cross-species utility of the SpitGrid

microbiology↗

bioRxiv2025

Expelling of P. falciparum sporozoites by Anopheles stephensi mosquitoes during repeated feeding

It is currently unclear whether repeated mosquito feeding attempts achieve pathogen transmission. We measured Plasmodium falciparum sporozoite expelling in Anopheles stephensi mosquitoes during two interrupted feeding attempts. The number of expelled sporozoites was positively correlated with salivary gland sporozoite load during the first feeding effort ({rho}= 0.36, p= 0.0181) but less so during subsequent feeding ({rho}= 0.06, p= 0.6811). The median number of expelled sporozoites was of similar magnitude during the first and second feeding event, with a strong correlation between them ({rho}= 0.56, p= 0.0002). We conclude that repeated feeding results in repeated sporozoite inoculation at similar intensity.

microbiology↗

bioRxiv2025

Building without the architect: the dispensable role of MICOS in de novo cristae formation in malaria parasites

The malaria parasite mitochondria represent the only tractable, naturally occurring system in which cristae, the characteristic invaginations of the inner mitochondrial membrane, are known to be formed de novo. In traditional model organisms, the central complex involved in cristae organization is the mitochondrial contact site and cristae organizing system (MICOS). However, whether MICOS has an active role in the initial formation of cristae remains unclear. We identified two putative Plasmodium falciparum MICOS components, PfMIC19 and PfMIC60 and show that both genes are dispensable in asexual blood stages, gametocytes, and mosquito stages, albeit with a mild reduction in oocyst numbers. Immunofluorescence microscopy and electron tomography of gametocytes lacking either or both MICOS orthologues showed aberrant mitochondrial morphology and abnormal cristae, with a marked reduction of crista junctions. Thus, by utilizing the unique properties of P. falciparum, we confirmed the involvement of PfMIC19 and PfMIC60 in the organization of crista junctions, while providing evidence that MICOS is not required for the initial formation of cristae.

microbiology↗

bioRxiv2025

Blood, sweat, and beers: investigating mosquito biting preferences amidst noise and intoxication in a cross-sectional cohort study at a large music festival

IntroductionWe live in a world split between mosquito magnets and those lucky enough to remain (nearly) untouched. The reasons why some people attract more mosquito bites than others remain largely mysterious. In the Mosquito Magnet Trial, we investigated differences in mosquito attraction amongst festivalgoers with varying levels of hygiene and intoxication. MethodsOur study was conducted in a slightly steamy pop-up laboratory inside four connected shipping containers at Lowlands Festival in The Netherlands (August 18-20, 2023). Participants completed an anonymous questionnaire on hygiene, diet, and festival-related behaviour (including alcohol uptake and shared sleeping arrangements). Mosquito attraction was measured using a custom designed setup: a transparent cage with perforations where female Anopheles mosquitoes were offered a choice between a sugar-feeder and the participants arm. Mosquitoes could only smell, not bite, the participants arm. Attraction was quantified through video imaging, measuring arm landings relative to total landings. Mosquito attraction was correlated with questionnaire responses and skin microbiota profiles collected from forearm skin swabs. ResultsAmongst the 465 included participants, mosquitoes showed a clear fondness for those who drank beer over those who abstained from the liquid gold (Fold Change 1.35, 95% CI 1.12-1.63, PFDR<0.001). Attraction was also contagious: participants that successfully lured a fellow human into their tent the previous night also proved more enticing to mosquitoes (FC 1.34, 95% CI 1.14-1.58, PFDR=0.002). Meanwhile, skipping the morning showering routine and using sunscreen reduced mosquito attraction (FC 0.52, 95% 0.38-0.70, PFDR<0.001). Streptococci were more abundant on the skin of highly attractive individuals (Puncorrected=0.017), and the overall abundance of malodour associated bacteria was high - possibly reflecting the containers smell. ConclusionThe Mosquito Magnet Trial, to our knowledge the largest study of its kind, was conducted in a loosely controlled setting with a selection bias towards science loving festivalgoers. That said, using our custom designed experimental set-up, we found that mosquitoes are drawn to those who avoid sunscreen, drink beer, and share their bed. They simply have a taste for the hedonists among us.

animal behavior and cognition↗

bioRxiv2024

Gametocyte production and transmission fitness of African and Asian Plasmodium falciparum isolates with differential susceptibility to artemisinins

The emergence of Plasmodium falciparum parasites partially resistant to artemisinins (ART-R) poses a significant threat to recent gains in malaria control. ART-R has been associated with PfKelch13 (K13) mutations, which differ in fitness costs. This study investigates the gametocyte production and transmission fitness of African and Asian P. falciparum isolates with different K13 genotypes across multiple mosquito species. We tested three ART-sensitive (ART-S) isolates (NF54, NF135, NF180) and three ART-R isolates (ARN1G, 3815, PAT-023) for sexual conversion and transmission to Anopheles stephensi, An. gambiae and An. coluzzii. ART-R levels were quantified in vitro using the Ring-stage Survival Assay (RSA), and the transmission-reducing effects of dihydroartemisinin (DHA) on mature gametocytes were assessed. Results showed that ART-S parasite lines consistently produced gametocytes and transmitted effectively in all three mosquito species. ART-R isolates showed variability: ARN1G maintained high transmission levels, whereas 3815 showed limited transmission potential despite higher sporozoite loads in An. coluzzii. The African ART-R isolate PAT-023 demonstrated low gametocyte commitment but was transmitted efficiently in both An. gambiae and An. coluzzii. DHA exposure reduced mosquito infectivity for all isolates, regardless of K13 genotype. These findings, based on a limited number of field isolates, suggest that ART-R parasites remain transmissible across different Anopheles species. However, ART-R does not appear to confer a direct transmission advantage. This study highlights the complexity of ART-R dynamics and underscores the need for further research to inform malaria control strategies in regions where ART-R parasites are circulating.

microbiology↗

bioRxiv2024

Pfs230 Domain 12 is a potent malaria transmission-blocking vaccine candidate

Malaria transmission-blocking vaccines (TBV) target sexual stage parasites that are transmitted to mosquitoes and critical for spread of the pathogen. The clinically most advanced TBV candidate contains part of the Pro-domain (Pro) and Domain 1 (D1) of Plasmodium falciparum surface protein Pfs230. Subunit vaccines that contain other domains of Pfs230 have so far failed to induce functional antibodies. Here, we produced eight single domain fragments of Pfs230 in Drosophila melanogaster S2 cells and assessed their immunogenicity in mouse immunizations. In addition to D1-specific antibodies, antibodies raised against Domain 12 (D12) showed strong recognition of Pfs230 on the surface of female parasites. Importantly, D12-specific antibodies showed strong functional transmission-reducing activity in membrane feeding assays with cultured parasites, an activity that was complement-dependent. Murine D12-specific antibodies further reduced mosquito transmission of parasites acquired from naturally infected parasite carriers. The D12 antigen was recognized by sera from an all-age cohort of individuals who had been naturally exposed to Plasmodium falciparum with antibody levels increasing with age. In conclusion, we identified Pfs230D12 as a promising new TBV candidate. Impact statementPfs230 Domain 12 induces antibodies in mice that strongly reduce transmission of lab-cultured and naturally circulating malaria parasites to mosquitoes.

immunology↗

bioRxiv2024

Modulation of host signalling pathways reveal a major role for Wnt signalling in the maturation of Plasmodium falciparum liver schizonts

After infection of the human host, the initial stage of the Plasmodium falciparum (Pf) lifecycle takes place in the liver. However, understanding of the host-parasite interaction has been limited by the rapid loss of functionality in cultured primary human hepatocytes (PHHs). Here, we link loss of hepatic functionality to drastic loss in Pf permissiveness, which we effectively prevent by using a novel medium containing serum-replacement and signal transduction inhibitors. Integrating transcriptomic analysis and phenotypic assessment of infection outcome, we identified several host signalling pathways that influence Pf liver stage development. Inhibition of the Wnt pathway in particular plays a major role in determining the size and maturity of Pf-liver schizonts, via retaining metabolic activity and epithelial nature of hepatocytes. Host signalling pathways determining Pf liver stage permissiveness provide insight into the complex host-parasite interaction and may accelerate development of novel therapeutic strategies for Pf-liver stages. (145)

microbiology↗

bioRxiv2024

Detailing organelle division and segregation in Plasmodium falciparum

The malaria causing parasite, Plasmodium falciparum, replicates through a tightly orchestrated process termed schizogony, where approximately 32 daughter parasites are formed in a single infected red blood cell and thousands of daughter cells in mosquito or liver stages. One-per-cell organelles, such as the mitochondrion and apicoplast, need to be properly divided and segregated to ensure a complete set of organelles per daughter parasites. Although this is highly essential, details about the processes and mechanisms involved remain unknown. We developed a new reporter parasite line that allows visualization of the mitochondrion in blood and mosquito stages. Using high-resolution 3D-imaging, we found that the mitochondrion orients in a cartwheel structure, prior to stepwise, non-geometric division during the last stage of schizogony. Analysis of focused ion beam scanning electron microscopy (FIB-SEM) data confirmed these mitochondrial division stages. Furthermore, these data allowed us to elucidate apicoplast division steps, highlighted its close association with the mitochondrion, and showed putative roles of the centriolar plaques (CPs) in apicoplast segregation. These observations form the foundation for a new detailed mechanistic model of mitochondrial and apicoplast division and segregation during P. falciparum schizogony and pave the way for future studies into the proteins and protein complexes involved in organelle division and segregation.

microbiology↗

bioRxiv2023

Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution

Complexome profiling allows large-scale, untargeted, and comprehensive characterization of protein complexes in a biological sample using a combined approach of separating intact protein complexes e.g., by native gel electrophoresis, followed by mass spectrometric analysis of the proteins in the resulting fractions. Over the last decade, its application has resulted in a large collection of complexome profiling datasets. While computational methods have been developed for the analysis of individual datasets, methods for large-scale comparative analysis of complexomes from multiple species are lacking. Here, we present Comparative Clustering (CompaCt), that performs fully automated integrative analysis of complexome profiling data from multiple species, enabling systematic characterization and comparison of complexomes. CompaCt implements a novel method for leveraging orthology in comparative analysis to allow systematic identification of conserved as well as taxon-specific elements of the analyzed complexomes. We applied this method to a collection of 53 complexome profiles spanning the major branches of the eukaryotes. We demonstrate the ability of CompaCt to robustly identify the composition of protein complexes, and show that integrated analysis of multiple datasets improves characterization of complexes from specific complexome profiles when compared to separate analysis. We identified novel candidate interactors and complexes in a number of species from previously analyzed datasets, like the emp24, the V-ATPase and mitochondrial ATP synthase complexes. Lastly, we demonstrate the utility of CompaCt for the automated large-scale characterization of the complexome of the mosquito Anopheles stephensi shedding light on the evolution of metazoan protein complexes. CompaCt is available from https://github.com/cmbi/compact-bio. Author summaryProteins carry out essential functions in the majority of processes in life, often by binding with other proteins to form multiprotein complexes. State of the art experimental techniques such as complexome profiling enable large-scale identification of protein complexes in a biological sample. With the increase in use of this method in recent years these experiments have been performed on a variety of species, of which the results are publicly available. Combining the results from these experiments presents a computational challenge, but could identify novel protein complexes and provide insights into their evolution. Here, we introduce CompaCt as a method to integrate complexome profiles from multiple species enabling automatic large-scale characterization of protein complexes. It identifies commonalities as well as the differences between species. By applying CompaCt to a collection of complexome profiles, we identified candidate complexes and interacting proteins in a number of species that were not detected in previous separate analyses of these datasets. In doing so we shed light on the evolutionary origin of several protein complex members, pinpointed the function of biomedically relevant proteins, whose role was previously unknown, and performed the first investigation of the Anopheles stephensi complexome, a mosquito that transmits the malaria parasite.

bioinformatics↗

bioRxiv2021

Artemisinin-independent inhibitory activity of Artemisia sp. infusions against different Plasmodium stages including relapse-causing hypnozoites

Artemisinin-based combination therapies (ACT) are the frontline treatments against malaria worldwide. Recently the use of traditional infusions from Artemisia annua (from which artemisinin is obtained) or A. afra (lacking artemisinin) has been controversially advocated. Such unregulated plant-based remedies are strongly discouraged as they might constitute sub-optimal therapies and promote drug resistance. Here, we conducted the first comparative study of the anti-malarial effects of both plant infusions in vitro against the asexual erythrocytic stages of P. falciparum and the pre-erythrocytic (i. e., liver) stages of various Plasmodium species. Low concentrations of either infusion accounted for significant inhibitory activities across every parasite species and stage studied. We show that these antiplasmodial effects were essentially artemisinin-independent and were additionally monitored by observations of the parasite apicoplast and mitochondrion. In particular, the infusions significantly incapacitated sporozoites, and for P. vivax and P. cynomolgi, disrupted the hypnozoites. This provides the first indication that compounds other than 8-aminoquinolines could be effective antimalarials against relapsing parasites. These observations advocate for further screening to uncover urgently needed novel antimalarial lead compounds.

microbiology↗