Biology subjects

Wu, X.

Publications and source records attributed to Wu, X..

At least 199 records · Page 11Linked to original sources

bioRxiv2025

Unique Gluing Effect of ASXL1 K351 Monoubiquitination Stimulates PR-DUB-Mediated Nucleosomal H2AK119Ub Deubiquitination

Protein ubiquitination plays a critical role in regulating fundamental biological processes through both proteolytic and nonproteolytic mechanisms. While classically known for its role in targeting proteins for degradation, ubiquitination can also modulate enzymatic activity. However, all of the known mechanisms of such modulation involve spatially constrained mechanisms that take place near the enzyme-substrate interfaces. Here, we report an unprecedented regulatory paradigm mediated by ubiquitination that is located distal to the enzyme-substrate interface but can still activate the polycomb repressive deubiquitinase (PR-DUB) complex. Using cryo-electron microscopy, molecular dynamics (MD) simulations, hydrogen-deuterium exchange mass spectrometry (HDX-MS), and kinetics assays, we determined that the ASXL1 K351 monoubiquitination promotes PR-DUB-mediated nucleosomal H2AK119Ub deubiquitination by stabilizing the catalytic pocket of PR-DUB, causing significant increase in maximal catalytic velocity (Vmax) but almost no change in the substrate binding affinity (Km). Structural analysis revealed that the ubiquitin moiety at ASXL1 K351 bridges the BAP1 and ASXL1 subunits, acting as an intramolecular "glue" that constrains the conformational dynamics of these subunits without altering the nucleosome binding interface. Further MD and HDX-MS results demonstrated the monoubiquitination of ASXL1 K351 enables PR-DUB to effectively maintain a spatial arrangement of the catalytic conformation that closely aligns with substrate cleavage. This study expands our understanding of the mechanisms of ubiquitin function to include intramolecular fastening with a molecular gluing effect and provides a deeper mechanistic understanding of PR-DUB activation in nucleosomal H2AK119Ub removal.

biochemistry↗

bioRxiv2025

Collagen Nanofiber Reinforced Alginate Hydrogel Tube Microbioreactors for Cell Culture

The large-scale production of mammalian cells is pivotal for various applications; however, current bioreactor technologies encounter significant technical and economic challenges. Scaling up cell cultures remains problematic due to excessive cell aggregation, shear stress-induced cell death, batch-to-batch inconsistencies, and limited scalability. We propose that engineering a cell-friendly microenvironment can enhance culture efficiency. Previously, we developed alginate hydrogel microtubes (AlgTubes) that significantly improved cell density and growth rates. Nevertheless, AlgTubes lack adhesion sites essential for anchorage-dependent cells and frequently break, causing cell leakage and production inconsistencies. To address these limitations, this study reinforced AlgTubes with collagen nanofibers, creating collagen-alginate hybrid hydrogel microtubes (ColAlgTubes). Utilizing a novel micro-extruder, we efficiently produced cell-loaded ColAlgTubes. Collagen formed a dense nanofiber network interwoven with the alginate mesh, enhancing the hydrogels mechanical properties while providing cell adhesion sites. ColAlgTubes protected cells from hydrodynamic stress and maintained cell mass within a 400 m diameter, ensuring efficient nutrient exchange and waste removal. This optimized microenvironment resulted in high cell viability, rapid proliferation, and exceptional yields of 5x108 cells/mL - 200 times higher than conventional culture methods. With their scalability, cost-effectiveness, and efficiency, ColAlgTubes offers a transformative solution for large-scale cell production with broad applications in biotechnology, regenerative medicine, and therapeutic manufacturing.

bioengineering↗

bioRxiv2025

Mesoscopic whole-brain T2*-weighted and associated quantitative MRI in healthy humans at 10.5 T

PurposeTo demonstrate the feasibility and performance of mesoscopic whole brain T2*-weighted (T2*w) MRI at 10.5 T by combining a motion-robust multi-echo gradient-echo (GRE) method with high-density RF receive arrays. MethodsMulti-echo GRE data were collected in healthy adults at isotropic 0.5 mm resolution using a custom-built 16-channel transmit/80-channel receive (16Tx/80Rx) RF coil. Whole brain images were reconstructed with navigator-guided joint motion and field correction and were used for quantitative R2* and susceptibility ({chi}) mapping. Intrinsic signal-to-noise ratio (iSNR) and quantification precision for R2* and{chi} were also estimated. The results were compared with those obtained in the same subjects with matched resolution at 7 T using the commercial Nova 1Tx/32Rx coil, to demonstrate the iSNR and quantification precision gains at 10.5 T. G-factors were also calculated at each field strength to evaluate parallel imaging performances. To demonstrate the benefit of increased parallel imaging performances at 10.5 T, whole brain images with higher acceleration were also obtained using a custom-built 16Tx/128Rx coil. Resultsthe utilized motion robust GRE sequence and reconstruction effectively reduced artifacts from motion and field changes during scans, producing high-quality whole-brain T2*w images and multi-parametric maps at 10.5 T with delineation of fine-scale brain structures. Compared to 7 T, the 10.5 T approach led to gains in both iSNR and quantification precision of R2* and{chi} . Quantitatively, iSNR estimated in the peripheral cortical gray matter increased by 42%. Parallel imaging performances were also improved at 10.5 T owing to the utilized high-density coils compared to the commonly used commercially available coil at 7 T, allowing high-quality images with up to 12-fold combined acceleration when using the 128Rx coil. ConclusionIt is feasible to perform motion-robust whole-brain mesoscopic multi-echo gradient echo imaging of the human brain at 10.5 T. Intrinsic SNR and quantification precision of R2* and{chi} were estimated and compared with 7 T results. The results presented here may shed light on future optimal implementation of anatomic T2*w brain MRI at ultrahigh field beyond 7 T.

bioengineering↗

bioRxiv2025

Single and Multiple Buds Form characteristics in Amorphophallus muelleri

This study compared the physiological characteristics and transcriptomic profiles of single-budded and multi-budded corms, as well as developmental stages of foliar bulbils in Amorphophallus muelleri, to reveal regulatory mechanisms underlying bud development. Hormonal analysis showed that the IAA/CTK ratio was significantly higher in single-budded corms (1.9060 vs 1.5753), while multi-budded corms exhibited higher CTK (0.2766 g/g), BR (0.8692 p mol/g), and SLs (0.5090 ng/g) levels. During foliar bulbils development, ABA content peaked at 41.54 ng/g in the G2 stage, and sucrose reached maximum levels (6.86 mg/g) in the G1 stage. Transcriptomic sequencing identified 742 differentially expressed transcription factors, with over 80% of CRE1 and AHP genes in CTK signaling pathways significantly upregulated. KEGG pathway analysis highlighted starch/sucrose metabolism (215 DEGs) and plant hormone signal transduction (243 DEGs) as key regulatory networks. The study demonstrated that CTK signaling activation and carbohydrate metabolic reprogramming promoted multi-bud formation, while foliar bulbils development displayed stage-specific gene expression patterns, providing theoretical insights for improving konjac propagation coefficient.

physiology↗

bioRxiv2025

Overcoming myeloid-driven resistance to CAR T therapy by targeting SPP1

Chimeric antigen receptor (CAR) T cell therapy faces notable limitations in treatment of solid tumors. The suppressive tumor microenvironment (TME), characterized by complex interactions among immune and stromal cells, is gaining recognition in conferring resistance to CAR T cell therapy. Despite the abundance and diversity of macrophages in the TME, their intricate involvement in modulating responses to CAR T cell therapies remains poorly understood. Here, we conducted single-cell RNA sequencing (scRNA-seq) on tumors from 41 glioma patients undergoing IL13R2-targeted CAR T cell therapy, identifying elevated suppressive SPP1 signatures predominantly in macrophages from patients who were resistant to treatment. Further integrative scRNA-seq analysis of high-grade gliomas as well as an interferon-signaling deficient syngeneic mouse model--both resistant to CAR T therapy--demonstrated the role of congruent suppressive pathways in mediating resistance to CAR T cells and a dominant role for SPP1+ macrophages. SPP1 blockade with an anti-SPP1 antibody abrogates the suppressive TME effects and substantially prolongs survival in IFN signaling-deficient and glioma syngeneic mouse models resistant to CAR T cell therapy. These findings illuminate the role of SPP1+ macrophages in fueling a suppressive TME and driving solid tumor resistance to CAR cell therapies. Targeting SPP1 may serve as a universal strategy to reprogram immune dynamics in solid tumors mitigating resistance to CAR T cell therapies.

cancer biology↗

bioRxiv2025

Population and adaptation history of 739 Thlaspi arvense natural accessions

Pennycress (Thlaspi arvense) is a promising intermediate oilseed crop, producing oil suitable for conversion to biofuels--including aviation fuels. While domestication efforts are ongoing, a deeper understanding of the genetic architecture of traits is crucial for informing future breeding efforts. Here, we conducted the largest genomic and phenotypic survey of pennycress to date, analyzing 739 accessions collected across four continents. Leveraging whole-genome sequencing and field-collected phenotypes, we characterized the standing genetic variation underlying key agronomic traits and climate resilience. Our findings revealed multiple independent migration events to North America, with substantial genetic admixture. We identified homologs of Arabidopsis thaliana flowering-time genes that contribute to adaptation and demonstrated the agronomic benefits of winter-type pennycress. Furthermore, through multi-season field trials, we identified a genomic region containing a cluster of mTERF genes strongly associated with green canopy coverage, a critical trait for biomass retention and yield stability. These insights provide a genomic roadmap for accelerating pennycress domestication and improving its resilience to climate variability.

genomics↗

bioRxiv2025

A Prefrontal Cortex-Nucleus Accumbens Circuit Attenuates Cocaine-conditioned Place Preference Memories

The infralimbic (IL) subregion of the prefrontal cortex (PFC), via its descending projection to the nucleus accumbens (NAc), inhibits cue-induced drug seeking and reinstatement, but the underlying mechanisms are not fully understood. Here we show that the intrinsic membrane excitability of IL layer 5 pyramidal neurons projecting to the NAc shell (IL-NAcSh neurons) suppresses cocaine-associated memories. Following repeated cocaine exposures in a conditioned place preference paradigm, IL-NAcSh neurons anatomically traced by fluorescent retrobeads undergo prolonged decrease of membrane excitability, lasting for at least 15 days after cocaine withdrawal. This persistent IL-NAcSh neuron hypoexcitability was accompanied by an increase in the rheobase, an increase in the afterhyperpolarization potential, and a decrease in the membrane input resistance. This cocaine induced neuroadapation in intrinsic excitability was not observed in prelimibic cortex neurons projecting to the NAc core (PL-NAcCo neurons), a separate descending circuit thought to promote cue-triggered drug seeking. Chemogenetic restoration of IL-NAcSh neuron activity extinguishes both the acquisition and retention of cocaine conditioned place preference memories. Our results provide direct support for the notion that the IL-NAcSh circuit serves to extinct drug associated memories and restoring the drug impaired excitability of IL-NAcSh neurons has the potential to mitigate drug-cue association memories and drug seeking.

neuroscience↗

bioRxiv2025

Regulation of alternative polyadenylation events by PABPC1 affects erythroid progenitor cell expansion

Erythropoiesis is precisely regulated by multilayer networks and is crucial for maintaining steady-state hemoglobin levels and ensuring effective oxygen transport. Alternative polyadenylation (APA) is a post-transcriptional regulatory mechanism that generates multiple mRNA isoforms from a single gene, based on specific 3-untranslated region sequences. While APA plays a vital role in various cellular processes, its mechanism in erythropoiesis remains unexplored. Here, we employed an integrative approach combining bioinformatics and experimental validation to systematically analyze APAs role in erythropoiesis. We mapped the APA landscape during erythroid differentiation, discovering notable APA shifts crucial for the maturation from burst-forming unit erythroid to colony-forming unit erythroid. Notably, our findings highlighted PABPC1 as the primary APA regulator of these stages. Functional investigations revealed that knocking down PABPC1 disrupts erythroid progenitor cell proliferation and differentiation, implicating the proteins essential role in modulating cell fate through APA regulation. We further identified that decreased PABPC1 levels led to the increased usage of the proximal polyA site of TSC22D1 and gene overexpression, revealing a novel mechanism through which APA affects erythroid progenitor expansion and differentiation. These insights uncover a novel dimension of APA regulation in early erythropoiesis, providing new strategies for the treatment of diseases associated with erythropoiesis disorders.

developmental biology↗

bioRxiv2025

Proteomic Analysis of PTEN-Deficient Cells Reveals Src-Mediated Upregulation of EphA2 and Therapeutic Potential of Dual Inhibition

Loss of the tumor suppressor PTEN is frequently observed in various cancers and promotes tumorigenesis by activating the PI3K-AKT pathway. However, the effectiveness of therapies targeting this pathway is limited by complex signaling crosstalk and compensatory mechanisms. Here, we employed quantitative proteomic and phosphoproteomic analyses using MCF10A PTEN knockout models to comprehensively map the signaling alterations induced by PTEN loss. Our analyses revealed that PTEN deficiency not only activates canonical PI3K-AKT signaling but also induces widespread changes in cytoskeleton organization, cell cycle regulation, and central carbon metabolism. PTEN loss also substantially elevates the activity of a variety of tyrosine kinases, including Src kinase and EphA2, a receptor tyrosine kinase (RTK) implicated in cancer progression. Mechanistic studies demonstrated that Src activation, rather than the canonical AKT signaling pathway, drives the upregulation of the receptor tyrosine kinase EphA2. The activation of the noncanonical tyrosine kinase signaling renders AKT inhibition alone insufficient in PTEN-deficient cancers. Importantly, combined treatment with the FDA-approved AKT inhibitor capivasertib and the Src inhibitor dasatinib synergistically induced apoptosis and suppressed the tumor cell growth in various PTEN-deficient cell lines as well as in three-dimensional cultures of endometrial cancer patient-derived xenograft models. Our study reveals that PTEN loss drives oncogenic signaling via dual activation of PI3K-AKT and tyrosine kinase pathways. Specifically, Src-mediated upregulation of EphA2 in PTEN-deficient cells highlights a therapeutic vulnerability that can be exploited by combined AKT and Src inhibition. This approach addresses the resistance associated with AKT inhibition alone and enhances therapeutic efficacy in PTEN-deficient cancers, supporting its potential application in targeted combination therapies.

cancer biology↗

bioRxiv2025

Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Literature

The extraction of molecular annotations from scientific literature is critical for advancing data-driven research. However, traditional methods, which primarily rely on human curation, are labor-intensive and error-prone. Here, we present an LLM-based agentic workflow that enables automatic and efficient data extraction from literature with high accuracy. As a demonstration, our workflow successfully delivers a dataset containing over 91,000 enzyme kinetics entries from around 3,500 papers. It achieves an average F1 score above 0.9 on expert-annotated subsets of protein enzymes and can be extended to the ribozyme domain in fewer than 3 days at less than $90. This method opens up new avenues for accelerating the pace of scientific research.

biochemistry↗

bioRxiv2025

The Landscape Ecology of Swidden: A Global Comparison Indicates Swidden Landscape Mosaics Contribute to Vegetation Diversity at Intermediate Levels of Disturbance

Swidden agriculture is a widespread anthropogenic disturbance regime in tropical forests. Swidden research often posits that aggregate levels of forest disturbance correlate with increased land degradation, however a landscape configuration approach may distinguish when swidden degrades landscapes and when it diversifies them. Here we analyze how the configuration of swidden mosaics relates to vegetation diversity. Using satellite imagery from 18 swidden societies across the African, Southeast Asian, and American tropics, we quantify patch geometry using landscape metrics and estimate vegetation diversity from spectral variation and develop a nonlinear hierarchical Bayesian model that links the structure of swidden mosaics with vegetation diversity. Our analyses reveal three dominant gradients of swidden mosaic patterns: (1) aggregation versus interspersion of land-cover types; (2) spatial dispersion versus synchronization of disturbed patches; and (3) alternative modes of landscape connectivity. Across sites, vegetation diversity exhibits a consistent nonlinear response, peaking at intermediate levels of disturbance intensity. These results demonstrate that swidden agriculture does not produce a singular, degradative outcome. Instead, its effects on vegetation diversity depend on how disturbance is spatially configured. By shifting attention from area-based measures of deforestation to landscape configuration, this study reframes swidden as a spatial process with the potential for diversity-enhancing outcomes.

ecology↗

bioRxiv2025

The Effect of Arsenic on Mitochondrial Fatty Acid Metabolism via Inhibition of Carnitine Palmitoyltransferase 1B and Choline Kinase Beta in C2C12 Cells

Arsenic can enter the human body through environmental exposure via food, drinking water, and chemotherapy for cancer. Prolonged and excessive exposure to arsenic causes various toxic reactions, leading to diseases that significantly impact health and lifespan. Increasing evidence suggests that arsenic damages skeletal muscle tissue by reducing muscle mass and causing atrophy, thereby contributing to conditions such as respiratory and cardiovascular diseases, as well as diabetes. Fatty acid {beta}-oxidation is the most efficient mechanism for ATP production and serves as a primary energy source for tissues, including the heart and skeletal muscles. However, the metabolic mechanisms underlying arsenics effects on muscle function and pathogenesis remain incompletely understood. In this study, we investigated the role of mitochondrial fatty acid oxidation in arsenic-induced muscular damage using mouse skeletal muscle C2C12 cells. Our results demonstrated a dose-dependent inhibitory effect of sodium arsenite (0-2 {micro}M, 72 hours) on C2C12 cells proliferation, viability, and differentiation (indicated by reduction of myogenic differentiation 1 mRNA expression). Arsenic exposure disrupted mitochondria through increasing reactive oxygen species production, reducing mitochondrial membrane potential, downregulating mitochondrial fatty acid metabolism-related enzymes (carnitine palmitoyltransferase 1B and choline kinase beta mRNA), and decreasing mitochondrial DNA copy number. These findings suggest that arsenic-induced pathological changes in skeletal muscle are associated with impaired mitochondrial membrane function, disrupted fatty acid metabolism, and reduced mitochondrial DNA content in muscle cells.

cell biology↗

bioRxiv2025

Stress drives plasticity in leaf maturation transcriptional dynamics

Leaf development is dynamic, adapting to environmental stress to optimize resource use. For example, in response to drought, Arabidopsis restricts leaf growth to enhance water use efficiency. While this plastic response is well described at the physiological level, the underlying transcriptional changes that facilitate adjustments in leaf development in response to stress remain poorly described. By constructing a [~]1 million single-nuclei transcriptome atlas, we demonstrate that drought stress limits leaf growth by advancing transcriptional responses related to maturation and aging. Notably, we find that these transcriptional changes scale with environmental stress, and help explain how shoot size can decline proportionally with stress intensity. Leveraging these insights, we increased leaf growth under stress by cell-type targeted upregulation of FERRIC REDUCTION OXIDASE 6 in the mesophyll.

plant biology↗

bioRxiv2025

Leopard Cats Occupied Human Settlements in China for 3,500 years before the Arrival of Domestic cats in 600-900 CE around the Tang Dynasty

The earliest cats in human settlements in China were not domestic cats (Felis catus), but native leopard cats (Prionailurus bengalensis). To trace when and how domestic cats arrived in East Asia, we analyzed 22 feline bones from 14 sites across China spanning 5,000 years. Nuclear and mitochondrial genomes revealed that leopard cats began occupying anthropogenic scenes around 5,400 years ago and last appeared in 150 CE. Following several centuries gap of archeological feline remains, the first known domestic cat (706-883 CE) in China was identified in Shaanxi during the Tang Dynasty. Genomic analysis suggested a white or partially white coat and a link to a contemporaneous domestic cat from Kazakhstan, indicating a likely dispersal route via the Silk Road. The two felids once independently occupied ancient anthropogenic environments in China but followed divergent paths and reached different destinations in human-animal interactions.

evolutionary biology↗

bioRxiv2025

The hepatitis E virus capsid protein ORF2 counteracts cell-intrinsic antiviral responses to enable persistence in hepatocytes

Hepatitis E virus (HEV) is a significant human pathogen causing both acute and chronic infections worldwide. The cell-intrinsic antiviral response serves as the initial defense against viruses and has been shown to be activated upon HEV infection. HEV can replicate in the presence of this response, but the underlying mechanisms remain poorly understood. Here, we investigated the role of the HEV structural proteins ORF2 and ORF3 in immunocompetent cells. Mechanistically, we validated that ectopic ORF2, but not ORF3, interfered with antiviral and inflammatory signaling downstream of pattern recognition receptors, in part through interaction with the central adaptor protein TANK binding kinase 1. In the full-length viral context, ORF2 contributed to a reduced antiviral response and consequently, more efficient viral replication. In addition, we discovered a protective mechanism mediated by ORF2 that shielded viral replication from antiviral effectors. Using single-cell RNA-sequencing, we confirmed that the presence of ORF2 in infected cells dampened antiviral responses in both actively infected cells and bystanders. As a consequence, we found that early in the infection process, the progression of authentic HEV infection relied on the presence of ORF2, facilitating a balance between viral replication and the antiviral response within immunocompetent cells. Altogether, our findings shed new light on the multifaceted role of ORF2 in the HEV life cycle and improve our understanding of the determinants that may contribute to HEV persistence. Significance statementHepatitis E virus (HEV) is an important yet often underestimated pathogen. Depending on the genotype, HEV infections can progress to chronicity, but the underlying mechanisms remain poorly understood. To gain insight into potential determinants, we investigated how HEV evades the bodys first line of defense, the cell-intrinsic antiviral response. We discovered that the HEV capsid protein ORF2 is crucial in limiting this response by interfering with antiviral signaling pathways and shielding viral replication from immune effectors. This balance between viral replication and the antiviral response contributes to persistent HEV infection in immunocompetent cells. Our findings reveal a new role for the HEV capsid protein in the viral life cycle and highlight it as an important target for novel therapeutic approaches.

microbiology↗

bioRxiv2025

Multiomics analysis revealed anti-freezing mechanism of Staphylococcus aureus in its anti-freezing strain

Frozen food is currently a common food type. However, the presence of Staphylococcus aureus contamination caused serious challenge to frozen food safety. In this study, we explored the differences between sensitive strains and anti-freeze strains through multiomics analysis such as proteomics, phosphorylated proteomics, and metabolomics studies to understand the anti-freezing mechanism of S. aureus. This study compared the proteomics, phosphorylated proteomics and metabolomic differences between anti-freeze strains and sensitive strains before and after freezing. pre- and post-freezing, antifreeze strains mainly responded to low temperatures by enhancing antioxidant capacity, energy metabolism and antibiotic synthesis before freezing, while after freezing, bacteria depended more on biofilm formation, nitrogen metabolism and amino acid metabolism to improve frost resistance and adaptability. The ket gene such as sucD and coaD in the energy metabolism and metabolic pathways, gapA1 and tpiA in glucose metabolism and energy balance, asd and gnd in the metabolic pathways of amino acid synthesis and protein synthesis, crtN in the context of protective mechanisms and stress response should be explored furthermore. In metabolomic research, the arginine synthesis pathway, biofilm formation pathway, Adenosine triphosphate-binding cassette transporters and other metabolic pathways deserve special attention and research. IMPORTANCEThis study highlights the importance of understanding the anti-freezing mechanisms of *Staphylococcus aureus* in frozen food safety. By analyzing proteomics, phosphorylated proteomics, and metabolomics, it identifies key pathways like energy metabolism, biofilm formation, and amino acid synthesis that enhance bacterial frost resistance, offering insights for improving food preservation and safety.

microbiology↗

bioRxiv2025

Epidermal Cell Dynamics Regulates Rice Lamina Joint Morphogenesis and Leaf Angle Formation through OsZHD1 and OsZHD2 Regulation

The lamina joint is a critical determinant of leaf angle and crop architecture. While epidermal cells play a fundamental role in organ morphogenesis, influencing the overall shape and function of plants, their impact on lamina joint morphology has been largely overlooked. Here, we tracked the cellular dynamics of the rice lamina joint epidermis during leaf angle formation. We found that the asymmetric elongation between the lateral and medial edges, determined by spatial differences in the longitudinal elongation and number of epidermal cells, was a key factor in leaf angle formation. Mutations in the homeobox genes OsZHD1 and OsZHD2 disrupted the growth patterns of epidermal cells in the lamina joint, resulting in a decreased leaf angle. Restoring OsZHD1 expression in the epidermis reverted the reduced leaf angle phenotype of oszhd1 oszhd2, highlighting the importance of epidermis development for lamina joint morphogenesis. Transcriptome data suggested that OsZHD1 and OsZHD2 were involved in auxin synthesis, which modulates leaf angle by inhibiting the growth of lamina joint epidermal cells. This study underscores the significance of epidermal cells in shaping the lamina joint and elucidates the critical role of OsZHD1 and OsZHD2 in regulating epidermal cell behavior and leaf angle formation.

plant biology↗

bioRxiv2025

Multicilia dynamically transduce Shh signaling to regulate choroid plexus functions

Choroid plexus is a major site for cerebrospinal fluid (CSF) production, characterized by a multiciliated epithelial monolayer that regulates CSF production. We demonstrate that defective choroid plexus ciliogenesis or Intraflagellar transport yields neonatal hydrocephalus, at least in part, due to increased water channel Aqp1 and ion transporter Atp1a2 expression. We demonstrate choroid plexus multicilia as sensory cilia, transducing both canonical and non-canonical Shh signaling. Interestingly, it is the non-canonical Shh signaling that represses Aqp1 and Atp1a2 expression by Smo/Gi/cAMP pathway. Choroid plexus multicilia exhibit unique ciliary ultrastructure, carrying features of both primary and motile cilia. Unlike most cilia that elongate during maturation, choroid plexus ciliary length decreases during development, causing a decline of Shh signaling intensity in developing choroid plexus, a derepression of Aqp1 and Atp1a2, and ultimately, an increased CSF production. Hence, developmental dynamics of choroid plexus multicilia dampens the Shh signaling intensity to promote CSF production.

developmental biology↗