Biology subjects

Vergne, J.

Publications and source records attributed to Vergne, J..

6 recordsLinked to original sources

bioRxiv2026

A Female-Specific Microglial Redox Program Gates Susceptibility to Obesity

Chronic consumption of energy-dense, high-fat foods persistently exposes hypothalamic circuits that govern body weight to nutrient excess, progressively altering their activity and thereby promoting obesity. Microglia, the brain resident immune cells, sense circulating lipids, but how their intracellular metabolic programs adapt to chronic dietary excess, and how this contributes to obesity risk, is unclear. Here, we reveal a sex-dependent control of calorie overload by hypothalamic microglial cells. In females, but not males, microglia engage a protective metabolic program with increased antioxidant capacity and mitochondrial network remodeling, conferring resistance to early weight gain. Over time, activation of mTORC1 signaling in microglia disrupts mitochondrial functions and dismantles this transient resilience, culminating in weight gain. These findings identify microglial mTORC1 as a sex-specific switch between resilience and vulnerability to obesity and position microglial metabolism as a tractable target for sex-informed weight control.

neuroscience↗

bioRxiv2026

Role of transposons in the specialization of Botrytis cinerea to grapevine: Insights into small RNAs and a new Starship

While transposable elements (TEs) are recognized as major drivers of fungal genome structure, evidence of their direct involvement in the interaction with host plants and the environment is only beginning to emerge. Retrotransposons can generate small RNA (sRNA) that act through cross-kingdom RNA interference, while giant DNA TEs called Starships carry dozens of cargo genes that enrich the accessory gene compartment of fungal genomes. In the polyphagous pathogen Botrytis cinerea, the Vv3 strain and other strains specialized on grapevine display a specific repertoire of TEs, including the retrotransposons BcCopia4, BcGypsy6, and BcGypsy7. This study first explored the putative role of sRNA generated from these retrotransposons in the interaction between the Vv3 strain and its host of origin, grapevine. Putative targets were identified among the host mRNAs, but predicted cleavage sites could not be experimentally validated. Moreover, Dicer mutants unable to produce retrotransposons-derived sRNA remained fully pathogenic on grapevine, indicating that these sRNAs do not act as virulence factors on this host. In parallel, this study provides an updated RNA-seq-based annotation of the accessory genes of the Vv3 strain, which revealed a new 93 kb-Starship harboring 43 cargo genes, some of which are related to arsenic resistance. A formal genetic approach confirmed that this locus confers resistance to this metalloid. This giant TE, named Ariane, was also detected in additional grapevine-specialized strains resistant to arsenic but not in strains isolated from other hosts such as tomato. In conclusion, this study highlights how a Starship giant transposon shaped the accessory genes compartment of the polyphagous fungus B. cinerea and may have contributed to its adaptation to vine cultivation by conferring resistance to arsenic, a compound widely used in vineyards during the last century. IMPACT STATEMENTFungal genomes contain many families of transposons whose functional role in adaptation to the environment and in biotic interactions remained hidden for a long time. In the grey mold fungus Botrytis cinerea, strains specialized on grapevine, such as Vv3, carry a specific repertoire of transposons which provides a valuable opportunity to investigate their role in niche adaptation. In this study, we first investigated retrotransposon-derived small RNA, previously described as effectors capable of manipulating the immunity of the model plant Arabidopsis thaliana. Although in silico analysis of the specific repertoire of small RNAs of the Vv3 strain suggested that some could target the expression of grapevine genes, a genetic approach demonstrated that they do not play a significant role in virulence on this host. In contrast, this study identified a new transposon, named Ariane, that carries 43 cargo genes and confers a selective advantage to the Vv3 strain. Ariane belongs to a family of giant transposons called Starships, recently discovered in fungi and considered to be responsible for horizontal genes transfers between unrelated species. Ariane was detected only in some B. cinerea strains isolated from grapevine, and a genetic cross showed that it provides these strains with the ability to grow in presence of arsenic. Arsenic was used in vineyards until the beginning of the 21st century to control fungal trunk diseases and insect pests. Therefore, Ariane appears to have played an important role in the adaptation of B. cinerea strains to cultivated grapevine. Overall, these results underline the importance of considering Starships when predicting emergence of resistance to antifungal compounds. DATA SUMMARYThe novel data described in this study, i.e., RNA-Seq data and the Starship element are accessible under NCBI GEO accession GSE327899 and at https://doi.org/10.57745/HYWRNM, respectively. All information related to Botrytis cinerea genomes used in this study are centralized and kept up to date at the Bioinfo Bioger genomic web portal: https://bioinfo.bioger.inrae.fr/portal/genome-portal/. Direct links to individual portals are respectively https://bioinfo.bioger.inrae.fr/portal/genome-portal/3/ for B. cinerea Vv3 genome, https://bioinfo.bioger.inrae.fr/portal/genome-portal/2/ for B. cinerea Sl3 genome, and https://bioinfo.bioger.inrae.fr/portal/genome-portal/4/ for B. cinerea populations isolated on tomato or grapevine. Each portal provides: (i) a centralized access to public genomic resources, including the genome, transposon, and RNA repositories; (ii) a data browser to download the genomic files; (iii) a genome browser that enables visualization of features within their genomic context, along with associated expression data. As a summary, the prior main public B. cinerea genomic accessions and resources used in this study are: GCA_039644125 for VV3 genome, GCA_022560135 for Sl3 genome, GCA_000143535 for B05.10 genome, PRJNA624742 for populations, https://doi.org/10.57745/HYWRNM for transposons, and GSE181592 for small RNAs. Furthermore, table S1 summarizes the list and characteristics of the 64 B. cinerea genomes publicly available to date. The genomic data for Vitis vinifera genome PN40024.v4 used in this study are available at: https://integrape.eu/resources/genes-genomes/genome-accessions/.

genomics↗

bioRxiv2026

Distinct SMA beta bursts support the development of anticipatory postural control in children

To produce smooth and coordinated movements, the brain generates anticipatory postural adjustments (APA) - feedforward motor commands that counteract predicted postural disturbances before they occur. Although APA emerge early in life, their maturation extends into early adulthood, yet little is known about the underlying neural mechanisms. Using magnetoencephalography during a naturalistic bimanual load-lifting task, we investigated anticipatory postural control in children aged 7-12 years. In this task, lifting a load from the contralateral postural forearm induces upward elbow rotation, which is anticipatorily counteracted by inhibition of Biceps brachii postural activity, stabilizing forearm posture. Surprisingly, despite greater variability in inhibition timing and less efficient forearm stabilization in children, the mechanism of anticipatory inhibition was consistent with that recently described in adults: it was mediated by transient oscillatory beta bursts (19-24 Hz), associated with reduced supplementary motor area (SMA) excitability indexed by high-gamma (90-130 Hz) power suppression, and preceded by directed influences from lateral prefrontal and ventral premotor cortex. However, burst frequency was lower in children, and an additional APA mechanism was recruited: while 19-24 Hz bursts were linked to immediate SMA suppression and stronger muscle inhibition, higher-frequency bursts (24-29 Hz) were associated with delayed ([~]100 ms) SMA suppression mediated by alpha activity (8 Hz), which attenuated post-inhibition forearm instability. These results reveal that children in middle childhood already engage adult-like neural mechanisms for anticipatory inhibition, while additionally recruiting a compensatory mechanism to counteract postural imprecision, providing new insights into the neural basis of APA maturation and its alteration in neurodevelopmental conditions.

neuroscience↗

bioRxiv2026

Adaptive evolution of transcriptome and transcriptomic plasticity in stable and fluctuating environments

Adaptation to new environments often involves multiple genes and can induce substantial changes in biological systems, but the overall consequences of the genetic response to specific environmental pressures remain poorly understood. Here, we investigate the large-scale effects of adaptation to new temperature regimes on the whole transcriptome from experimental evolution carried on the fungus Zymoseptoria tritici. Two distinct strains from the wild were grown in constant cool (17{degrees}C), constant warm (23{degrees}C), and fluctuating temperature environments, for about 250 clonal generations. The expression of > 10,000 genes was estimated by RNA-seq before and after evolution at several temperatures. We observed massive convergent change in both gene expression and gene expression plasticity. Fluctuating environments did not favor plastic gene expression in general, although fluctuating populations did evolve towards the optimal reaction norms. Some of our observations were at odds with common expectations; adaptive mutations were highly pleiotropic, and adaptation to stable temperature conditions did not match gene expression plasticity. We thus showed that the evolution of complex biological systems follow some general patterns which challenge gene-centered or quantitative genetics predictions.

evolutionary biology↗

bioRxiv2024

Perception/action coupling in children with autism: insights from looking time and pupil dilation measurements

The objective of this study was to characterize, through indices extracted from eye-tracking measurements, the spontaneous distinction of videos of daily actions with a variable perception/action coupling, depending on whether, for the same action, the video was presented in the forward reading direction (strong coupling), or in the backward reading direction (weaker coupling). 17 pairs of videos of daily actions performed by adults were viewed by 36 typically developing children and 28 children with ASD aged 7-18 years. During the exposure phase, they watched two videos of the same action (forward and backward) presented successively, before looking at these two videos in competition, in a second visual preference phase. During the exposure phase, all participants paid similar general attention to each of the videos. We found greater pupillary dilation for backward than forward actions in both groups, but significantly less in the ASD group. In the visual preference phase, both groups showed significantly greater looking times for backward actions over forward ones, with no difference between groups. If TD children perceived the kinematics of the backward videos as violating their expectations given the strong perception/action coupling they had already built over that action, on the contrary, the lower increased in pupil dilation found in ASD children could reflect altered perception/action coupling. This study confirms the validity of looking time and pupil dilation as behavioral and physiological markers that could be used in a 10-mn eye-tracking test to explore perception/action coupling in childhood and in ASD. Lay summaryPeople with ASD often have difficulty understanding the actions of others. The fine understanding of actions requires a coupling between the action we observe, and its representation stored in our memory. This process might be challenged in autism. Here we used a 10-mn eye-tracking test to explore perception/action coupling in ASD. Participants were watching videos of daily actions. Looking time and pupil dilation were measured while participants watched videos of daily actions, and were found to be relevant indexes.

neuroscience↗

bioRxiv2023

Yeast-based heterologous production of the Colletochlorin family of fungal secondary metabolites

Transcriptomic studies have revealed that fungal pathogens of plants activate the expression of numerous biosynthetic gene clusters (BGC) exclusively when in presence of a living host plant. The identification and structural elucidation of the corresponding secondary metabolites remain challenging. Here we adapted a polycistronic vector for efficient, seamless and cost-effective cloning of biosynthetic genes using in vivo assembly (also called transformation-assisted recombination) directly in Escherichia coli followed by heterologous expression in Saccharomyces cerevisiae. Two vectors were generated with different auto-inducible yeast promoters and selection markers. The effectiveness of these vectors was validated with fluorescent proteins. As a proof-of-principle, we applied our approach to the Colletochlorin family of molecules. These polyketide secondary metabolites were known from the phytopathogenic fungus Colletotrichum higginsianum but had never been linked to their biosynthetic genes. Considering the requirement for an halogenase, and by applying comparative genomics, we identified a BGC putatively involved in the biosynthesis of Colletochlorins in C. higginsianum. Following the expression of those genes in S. cerevisiae, we could identify the presence of the precursor Orsellinic acid, Colletochlorins and their non-chlorinated counterparts, the Colletorins. In conclusion, the polycistronic vectors described herein were adapted for the host S. cerevisiae and allowed to link the Colletochlorin compound family to their corresponding biosynthetic genes. This system will now enable the production and purification of infection-specific secondary metabolites of fungal phytopathogens. More widely, this system could be applied to any fungal BGC of interest.

microbiology↗