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Sugimoto, N.

Publications and source records attributed to Sugimoto, N..

5 recordsLinked to original sources

Inter-individual variability in motor learning due to differences in effective learning rates between generalist and specialist memory stores

Humans exhibit large interindividual differences in motor learning ability. However, most previous studies have examined properties common across populations, with less emphasis on interindividual differences. We hypothesized here, based on our previous experimental and computational motor adaptation studies, that individual differences in effective learning rates between a generalist memory module that assumes environmental continuity and specialist modules that are responsive to trial-by-trial environmental changes could explain both large population-wise and individual-wise differences in dual tasks adaptation under block and random schedules. Participants adapted to two opposing force fields, either sequentially with alternating training blocks or simultaneously with random sequences. As previously reported, in the block training schedule, all participants adapted to the force field presented in a block but showed large interference in the subsequent opposing force field blocks, such that adapting to the two force fields was impossible. In contrast, in the random training schedule, participants could adapt to the two conflicting tasks simultaneously as a group; however, large interindividual variability was observed. A modified MOSAIC computational model of motor learning equipped with one generalist module and two specialist modules explained the observed behavior and variability for wide parameter ranges: when the predictions errors were large and consistent as in block schedules, the generalist module was selected to adapt quickly. In contrast, the specialist modules were selected when they more accurately predicted the changing environment than the generalist, as during random schedules; this resulted in consolidated memory specialized to each environment, but only when the ratio of learning rates of the generalist to specialists was relatively small. This dynamic selection process plays a crucial role in explaining the individual differences observed in motor learning abilities.

neuroscience↗

Application of fluorescence lifetimes to multi-imaging analysis in plant cells

Multi-imaging analysis has become an indispensable technique to visualize multiple target proteins and intracellular components simultaneously. While current multi-imaging analysis relies on the differences in emission spectra of fluorescent molecules, the use of fluorescence lifetime imaging microscopy (FLIM), which exploits the differences in fluorescence lifetimes of fluorescent proteins, in multi-imaging analysis is quite limited. In this study, we successfully discriminated fluorescent proteins with similar colors but different fluorescence lifetimes in vitro and in planta. We found that four fluorescent proteins with similar emission spectra could be distinguished by FLIM. In addition, we found that FLIM could clearly separate fluorescent proteins if they differ by at least 0.2 ns. In a proof-of-concept experiments for plant live imaging, we transiently expressed fluorescent proteins with different subcellular localization tags in Physcomitrium patens by particle bombardment. Each fluorescent protein exhibited its fluorescence lifetime at the subcellular localization corresponding to the localization tag in P. patens with little or no effect of chlorophyll autofluorescence. Our results demonstrate the effectiveness of FLIM in revealing the spatiotemporal dynamics of a large number of fluorescent proteins in living plant cells.

cell biology↗

Hierarchical trait-based model reveals positive and negative effects of land abandonment on butterfly communities across climatic regions in Japan

Land abandonment may decrease biodiversity but also provides an opportunity for rewilding. It is therefore necessary to identify areas that may benefit from traditional land management practices and those that may benefit from a lack of human intervention. In this study, we conducted comparative field surveys of butterfly occurrence in abandoned and inhabited settlements in 18 regions of diverse climatic zones in Japan to test the hypotheses that species-specific responses to land abandonment correlate with climatic niches and habitat preferences. Hierarchical models that unified species occurrence and habitat preferences revealed that negative responses to land abandonment were associated with species that have cold climatic niches and utilize open habitats, suggesting that species negatively impacted by land abandonment will decline more due to future climate warming. Maps representing species gains and losses due to land abandonment, which were created from the model estimates, showed similar geographic patterns, but some areas exhibited high species losses relative to gains. Our hierarchical modelling approach was useful for scaling up local-scale effects of land abandonment to a macro-scale assessment, which is crucial to developing spatial conservation strategies in the era of depopulation.

ecology↗

TRF2-mediated ORC recruitment underlies telomere stability upon DNA replication stress

Telomeres are intrinsically difficult-to-replicate regions of eukaryotic chromosomes. Telomeric repeat binding factor 2 (TRF2) binds to origin recognition complex (ORC) to facilitate the loading of ORC and the replicative helicase MCM complex onto DNA at telomeres. However, the biological significance of the TRF2-ORC interaction for telomere maintenance remains largely elusive. Here, we employed a separation-of-function TRF2 mutant with mutations in two acidic acid residues (E111A and E112A) that specifically inhibited the TRF2-ORC interaction in human cells without substantially inhibiting TRF2 interactions with its other binding partners. The TRF2 mutant was impaired in ORC recruitment to telomeres and showed increased replication stress-associated telomeric DNA damage and telomere instability. Furthermore, overexpression of an ORC1 fragment (amino acids 244-511), which competitively inhibited the TRF2-ORC interaction, increased telomeric DNA damage under replication stress conditions in human cells. Taken together, these findings suggest that TRF2-mediated ORC recruitment contributes to the suppression of telomere instability.

cell biology↗

N-Aryl Pyrido Cyanine derivatives: nuclear and organelle DNA markers for two-photon and super-resolution imaging

Live cell imaging using DNA-binding fluorescent probes is an essential molecular tool in various biological and biomedical fields. The major challenges in currently used DNA probes are to avoid UV light photo-excitation with high DNA selectivity and cell-permeability and are the availability of the cutting-edge imaging techniques such as a super-resolution microscopy. Herein we report new orange to red fluorogenic DNA probes having N-aryl pyrido cyanine (PC) moiety as a basic skeleton. Their DNA selectivity and cell-permeabilities are so high that organelle DNA as well as nuclear DNA can be clearly stained in various cell types and plant tissues with wash-free manner. PC dyes are also compatible with a stimulated emission depletion fluorescent lifetime imaging microscopy (STED-FLIM) for super-resolution imaging as well as two-photon microscopy for deep tissue imaging, should release the utilization limitation of synthetic DNA probes.

cell biology↗