Biology subjects

Smith, N. G.

Publications and source records attributed to Smith, N. G..

6 recordsLinked to original sources

bioRxiv2026

Nutrient enrichment and herbivore exclusion disrupt the climate-driven balance between C3 and C4 plants in grasslands

The distribution of plants with different photosynthetic pathways is strongly structured by climate, with C3 plants favoured in cooler temperate regions and C4 plants in hotter, high-light conditions. The relative abundance of C3 and C4 plants across the world has cascading impacts on local food webs, decomposition, productivity and other vital ecosystem processes. Human impacts, including climate change, changes to herbivore assemblages, and increased nutrient availability, are shifting the optimal conditions for important C3 and C4-dominated ecosystems and crops. Using 3,184 plot-level observations from 112 sites across six continents, we reveal how chronic nutrient enrichment disrupts the climate-driven balance between C3 and C4 plants in grasslands. We found that, consistent with expectations, the global distribution of C4 plants was strongly related to climate. However, experimental nutrient addition reduced the relative cover of C4 species, with the strongest declines found when nitrogen and phosphorus were added together. Herbivore exclusion had no consistent effect on C4 plants. Our results provide global experimental evidence that elevated nutrients, particularly nitrogen, alter competitive outcomes among plant functional types to suppress C4 grasses, even in climatically optimal conditions. This has major implications for predicting vegetation responses to global change, with consequences for carbon cycling, primary productivity, herbivore dynamics, and food security.

ecology↗

bioRxiv2025

Satisfying leaf nitrogen demand under drought is determined by soil nitrogen availability and drought severity

Plants balance water and nitrogen acquisition to optimize carbon gain, particularly under resource-limited conditions. These tradeoffs can be predicted from the photosynthetic least-cost theory, but its applicability under severe drought and nitrogen limitation within a single species remains untested. We examined how soil water stress and nitrogen limitation shape leaf-level water and nitrogen economics and the associated plant carbon costs of soil resource acquisition in common sunflower (Helianthus annuus L.) grown under two nitrogen levels and three soil water availability scenarios. Contrary to photosynthetic least-cost theory, increasing drought severity reduced leaf nitrogen content (Narea) under low nitrogen, likely due to impaired nitrogen uptake via transpiration-driven mass flow. Likewise, the maximum Ribulose-1,5-Biphosphate Carboxylase/Oxygenase (RuBisCO) carboxylation rate (Vcmax) and net photosynthetic rate (Anet) decreased over time as drought progressed under low soil nitrogen. However, under high nitrogen, and in line with least-cost theory, Narea, Vcmax and Anet remained stable, with Narea increasing over time, enhancing leaf water-use efficiency. Total leaf area and biomass increased with soil nitrogen availability, but this effect weakened under severe drought. Notably, carbon costs of nitrogen acquisition increased with drought severity only under low nitrogen, indicating water stress impedes nitrogen uptake. These findings highlight the need to integrate soil resource demand and availability into photosynthesis models, especially under extreme drought and nitrogen limitation.

plant biology↗

bioRxiv2024

Thermal acclimation of stem respiration reduces global carbon burden

Stem respiration is a key driver of carbon flux from ecosystems to the atmosphere, yet its response to global warming remains poorly constrained. In particular it has been proposed that stem respiration acclimates to changing temperatures, which could have large implications for carbon cycling under climate change, but no theory exists to predict acclimated respiration rates. Here, we hypothesized that stem respiration is physiologically linked to transpiration in order to maintain hydraulic continuity. We then use that linkage, combined with Eco-evolutionary optimality theory, to develop a theoretical prediction of the temperature sensitivity of both acclimated and instantaneous stem respiration. Leveraging an extensive global dataset, we observe temperature sensitivities of stem respiration across geographical and seasonal variations that are consistent with this prediction. Our findings reveal that stem respiration contributes approximately a quarter of the global above-ground auto-trophic respiration, with an estimated annual emission of around 11.20 {+/-} 5.88 Pg C--comparable to total anthropogenic emissions. Importantly, incorporating thermal acclimation of stem respiration into projections significantly reduces predicted land ecosystem carbon emissions by 4.41 and 9.56 Pg C under the SSP126 and SSP585 scenarios, respectively, for the 21st century.

ecology↗

bioRxiv2023

Effects of greening-induced warming and cooling on tree phenology in temperate and boreal forests

Tree phenology, periodic biological events in trees, is highly sensitive to climate change. It has been reported that forest greening can influence the local climate by altering the seasonal surface energy budget. However, tree phenological responses to forest greening remains poorly understood at large spatial scales. Combining remote-sensing derived phenological and leaf area indices since 2001, herein we show that forest greening led to earlier spring (-1.05 {+/-} 0.17 d) and autumn phenology (-1.95 {+/-} 0.14 d) in temperate and boreal forests. Our results show that forest greening in winter and spring decreased surface albedo and thus resulted in biophysical warming that caused earlier spring leaf phenology. In contrast, forest greening in summer and autumn triggered biophysical cooling by enhancing evapotranspiration, which led to earlier autumn leaf phenology. These findings suggest that forest greening could significantly alter tree phenology through seasonal biophysical impacts. Therefore, it is essential to incorporate these complicated biophysical impacts of greening into tree phenology models to accurately predict future shifts in tree phenology under future climate change.

ecology↗

bioRxiv2023

Nitrogen demand, supply, and acquisition strategy control plant responses to elevated CO2 at different scales

Plants respond to elevated atmospheric CO2 concentrations by reducing leaf nitrogen content and photosynthetic capacity - patterns that correspond with increased net photosynthesis rates, total leaf area, and total biomass. Nitrogen supply has been hypothesized to be the primary factor controlling these responses, as nitrogen availability limits net primary productivity globally. Recent work using evo-evolutionary optimality theory suggests that leaf photosynthetic responses to elevated CO2 are independent of nitrogen supply and are instead driven by leaf nitrogen demand to build and maintain photosynthetic enzymes, which optimizes resource allocation to photosynthetic capacity and maximizes allocation to growth. Here, Glycine max L. (Merr) seedlings were grown under two CO2 concentrations, with and without inoculation with Bradyrhizobium japonicum, and across nine soil nitrogen fertilization treatments in a full-factorial growth chamber experiment to reconcile the role of nitrogen supply and demand on leaf and whole-plant responses to elevated CO2. After seven weeks, elevated CO2 increased net photosynthesis rates despite reduced leaf nitrogen content and maximum rates of Ribulose-1,5-bisphosphate (RuBP) carboxylase/oxygenase (Rubisco) carboxylation and electron transport for RuBP regeneration. Effects of elevated CO2 on net photosynthesis and indices of photosynthetic capacity were independent of nitrogen fertilization and inoculation. However, increasing nitrogen fertilization enhanced positive effects of elevated CO2 on total leaf area and total biomass due to increased nitrogen uptake and reduced carbon costs to acquire nitrogen. Whole-plant responses to elevated CO2 were not modified by inoculation across the nitrogen fertilization gradient, as plant investment toward symbiotic nitrogen fixation was similar between CO2 treatments. These results indicate that leaf nitrogen demand to build and maintain photosynthetic enzymes drives leaf photosynthetic responses to elevated CO2, while nitrogen supply regulates whole-plant responses. Our findings build on previous work suggesting that terrestrial biosphere models may improve simulations of photosynthetic processes under future novel environments by adopting optimality principles.

plant biology↗

bioRxiv2018

Targeted mutation detection in breast cancer using MammaSeqTM

BackgroundBreast cancer is the most common invasive cancer among women worldwide. Next-generation sequencing (NGS) has revolutionized the study of cancer across research labs around the globe, however genomic testing in clinical settings remain limited. Advances in sequencing reliability, pipeline analysis, accumulation of relevant data, and the reduction of costs are rapidly increasing the feasibility of NGS-based clinical decision making.\n\nMethodsWe report the development of MammaSeq, a breast cancer specific NGS panel, targeting 79 genes and 1369 mutations, optimized for use in primary and metastatic breast cancer. To validate the panel, 46 solid tumor and 14 plasma circulating-free cfDNA samples were sequenced to a mean depth of 2311X and 1820 X respectively. Variants were called using Ion Torrent Suite 4.0 and annotated with cravat CHASM. CNVKit was used to call copy number variants in the solid tumor cohort. The oncoKB Precision Oncology Database was used to identify clinically actionable variants. ddPCR was used to validate select cfDNA mutations.\n\nResultsIn cohorts of 46 solid tumors and 14 cfDNA samples from patients with advanced breast cancer we identified 592 and 43 protein coding mutations. Mutations per sample in the solid tumor cohort ranged from 1 to 128 (median 3) and the cfDNA cohort ranged from 0 to 26 (median 2.5). Copy number analysis in the solid tumor cohort identified 46 amplifications and 35 deletions. We identified 26 clinically actionable variants (levels 1-3) annotated by OncoKB, distributed across 20 out of 46 cases (40%), in the solid tumor cohort. Allele frequencies of ESR1 and FOXA1 mutations correlated with CA.27.29 levels in patient matched blood draws.\n\nConclusionsIn solid tumors biopsies and cfDNA, MammaSeq detects clinicaly actionable mutations (oncoKB levels 1-3) in 22/46 (48%) solid tumors and in 4/14 (29%) of cfDNA samples. MammaSeq is a targeted panel suitable for clinically actionable mutation detection in breast cancer.

cancer biology↗