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Matsuda, T.

Publications and source records attributed to Matsuda, T..

At least 19 recordsLinked to original sources

Distinct Patterns of Adaptive Decision-Making in Mouse Models of Neurodevelopmental Disorders

Neurodevelopmental disorders (NDDs) arise from diverse genetic alterations that can affect adaptive decision-making, but quantifying specific components of cognitive processes remains challenging. We developed a sequence of deterministic and probabilistic reversal learning tasks using an automated operant platform and applied reinforcement-learning models to quantify latent cognitive processes in mice. We applied this framework to three genetic NDD models: Mecp2+/- (Rett syndrome), MECP2-Tg1 (MECP2 duplication syndrome), and Kmt2c+/fs (KMT2C haploinsufficiency) mice. Mecp2+/- mice showed heterogeneous impairment in acquiring deterministic reversal learning, accompanied by reduced task engagement and increased premature responses. MECP2-Tg1 mice exhibited mild impairment of deterministic reversal learning but preserved performance in probabilistic reversal learning. Although Kmt2c+/fs mice showed largely preserved behavioral performance, reinforcement-learning modeling revealed increased learning from unrewarded outcomes and faster forgetting of unchosen options, which were not apparent from overall performance. These findings demonstrate that combining quantitative reversal learning tasks with computational modeling can distinguish specific alterations in cognitive processes, providing an effective framework for characterizing cognitive dysfunction across mouse models of NDDs.

neuroscience↗

Perceptual similarity representations beyond the sensory cortex

It is commonly thought that information supporting conscious perception is primarily represented in sensory cortices, whereas association cortex encodes more abstract, task-dependent information. However, this impression may partly stem from difficulties in experimentally assessing the functions of association areas characterized by mixed selectivity and complex spatial topography. Here, we combined repetition-suppression (RS) and multi-voxel pattern analysis (MVPA) to extract richer information from human fMRI. With this approach, we asked whether association regions represent the perceptual similarity structure among color stimuli, although this perceptual similarity information was task-irrelevant in the experiment. Our analysis revealed such representations beyond the visual cortex, in lateral prefrontal, and parietal regions. We further demonstrated an electrophysiological complement to the fMRI findings by applying the same approach to local field potentials recorded in the macaque dorsomedial parietal cortex. Our findings suggest that higher-order areas beyond the visual cortex may play a key role in subjective color perception.

neuroscience↗

VLCFA-mediated inter-cell layer communication controls cellular pluripotency in Arabidopsis callus

Plants have remarkable capacity to reconstruct entire organ systems from tissue explants. In Arabidopsis two-step tissue culture system, pluripotency regulators are specifically expressed in the middle-cell layer of the stratified callus tissue. However, regulatory mechanisms underlying the radial patterning of callus remained unclear. Here, we found that very-long-chain fatty acids (VLCFAs) synthesized in the epidermis-like outermost layer are essential for pluripotency acquisition and successful shoot regeneration. Our genetic and transcriptomic analyses revealed that the regulatory roles of VLCFAs on pluripotency acquisition involve inter-cell layer signaling in callus tissue, while they are at least partly independent of ATML1/PDF2 functions and cuticular wax synthesis in the outermost layer. VLCFAs spatially restrict procambium cell identity by non-cell-autonomously suppressing cytokinin signaling, thereby allowing for establishment of the middle-cell layer. We propose that the inhibitory relationships between layer-specific regulators underlie the intricate balance of cellular fate determination in pluripotent callus.

plant biology↗

Dual-site specificity of the archaeal tRNA m2G methyltransferase Trm14

N2-methylguanosine (m2G) is widely found at multiple positions in tRNAs across the three domains of life. Tryptophan tRNA from Thermococcus kodakarensis contains m2G at position 67. We previously proposed that the tRNA m2G methyltransferase Trm14 is responsible for m2G67 formation in tRNATrp from T. kodakarensis, although Trm14 was originally identified as the enzyme catalyzing m2G6 formation in tRNACys in Methanocaldococcus jannaschii. Thus, it remained unclear whether Trm14 could also methylate G67. Here, we characterized archaeal Trm14. Biochemical analyses using recombinant T. kodakarensis Trm14 revealed that the enzyme catalyzes m2G formation at positions 6 and 67 in T. kodakarensis tRNACys and tRNATrp transcripts, respectively. Mass spectrometric analyses demonstrated the loss of m2G6 and m2G67 in native tRNACys and tRNATrp, respectively, from a T. kodakarensis trm14 gene disruptant strain, providing direct evidence for the dual-site specificity of T. kodakarensis Trm14. The growth phenotype of the trm14 gene disruptant strain was comparable to that of the wild-type strain. In contrast, a trm14/trm11 double disruptant, in which trm11 encodes the tRNA m2G10/m22G10 methyltransferase, exhibited severe growth retardation at 95 {degrees}C. This suggests that m2G6/m2G67 and m2G10/m22G10 cooperatively contribute to cellular fitness at high temperatures. Biochemical analyses revealed that Trm14 methylates all 46 T. kodakarensis tRNA transcripts. Furthermore, we found that recombinant M. jannaschii Trm14 methylated both positions. In contrast, the bacterial ortholog TrmN modified only position 6 in tRNA. Overall, this study expands our understanding of archaeal Trm14 by demonstrating its broader substrate specificity and the physiological significance of these modifications under hyperthermophilic conditions.

molecular biology↗

From introduction to eradication: reconstructing population size and removal history of an invasive species

O_LIUnderstanding the processes underlying successful eradication of invasive species is essential for achieving global island conservation goals. Despite the widespread availability of capture records from eradication programs, modeling frameworks that utilize these datasets to elucidate spatio-temporal population dynamics remain underdeveloped. C_LIO_LIIn this study, we reconstructed the spatio-temporal population dynamics of the small Indian mongoose on Amami-Oshima Island (712 km{superscript 2}), Japan, where the species was introduced in 1979 and officially declared eradicated in 2024 after more than 30 years of systematic removal. We integrated introduction records, capture data, and monitoring data using a hierarchical harvest-based model (HBM). To evaluate the models capacity to support management decisions and assess eradication success, we conducted retrospective analyses and compared estimated eradication probabilities with those obtained from a rapid eradication assessment (REA; Samaniego-Herrera et al., 2013). C_LIO_LIThe estimated population size (before reproduction) peaked at 5,449 individuals (95% CI: 4,703, 6,175) in 2000 and subsequently declined almost monotonically. The maximum invaded area was 547.78 km{superscript 2} (posterior median, 95% CI: 496.47, 566.04) in 2009, indicating that the removal program successfully prevented island-wide expansion. Retrospective analyses showed that population estimates remained within the 95% credible intervals of the full dataset estimates, demonstrating temporal consistency. Eradication probabilities estimated by the HBM were substantially higher than those from the REA, highlighting the sensitivity of estimates to fine-scale heterogeneity in detection processes. C_LIO_LISynthesis and applications: Hierarchical HBMs provide a powerful framework for reconstructing, predicting, and evaluating invasive species eradication dynamics. Being aware of the limitations for application to eradication evaluations, HBMs can support adaptive management in long-term eradication programs and improve our understanding of the mechanisms underlying successful eradication. C_LI

ecology↗

Tractometry reproducibility and generalizability across scanners, scanner models, and acquisition protocols

Diffusion-weighted magnetic resonance imaging (dMRI)-based tractometry enables the quantification of white matter tissue properties in living humans while preserving anatomical specificity. Although tractometry is highly reproducible when the same scanner and acquisition protocol are used, its generalizability across scanners and protocols remains unclear. To address this gap, we performed a traveling-head experiment involving five subjects to evaluate tractometry across progressively different acquisition conditions, including multiple scanners, different scanner models, and two distinct protocols. Tractometry was performed for 20 major white matter tracts using diffusion tensor imaging metrics, neurite orientation dispersion and density imaging (NODDI) metrics, and a semi-quantitative ratio metric (T1w/b0). Generalizability across dataset pairs was quantified using the intraclass correlation coefficient (ICC). Tractometry showed consistently high ICCs when the scanner and protocol were identical; however, ICCs declined as differences in scanner model and acquisition protocol increased. Fractional anisotropy and orientation dispersion index retained relatively high ICCs across these comparisons, whereas other metrics showed marked declines when scanners or protocols differed. ComBat harmonization partially mitigated these declines, but ICCs did not reach the levels observed for datasets acquired using identical scanners and protocols. Finally, the minimum detectable change (MDC) for tractometry in datasets pooled across scanners and protocols varied by tract; for example, the optic radiation showed a lower MDC than the cingulum hippocampus. These findings highlight both the strengths and limitations of tractometry in multisite studies and highlight the importance of quantifying scanner- and protocol-dependent effects for specific metrics and tracts when interpreting measurements from heterogeneous datasets.

neuroscience↗

Dietary soy shapes murine microbiota to consolidate the mucosal IgA response through T follicular helper cells

The commensal microbiota plays a crucial role in shaping mucosal immunity, particularly in the induction of T follicular helper (Tfh) cells and IgA production. Here, we demonstrate that dietary soy elicits a robust Tfh cell and IgA response in Peyers patches of weaning mice. Soy feeding promotes the expansion of two principal commensal bacterial species, Limosilactobacillus reuteri and Muribaculum intestinale. Mechanistically, L. reuteri provides cognate antigens for Tfh cell activation, while M. intestinale functions as an adjuvant by promoting IL-1{beta} production from myeloid cells. The resulting IgA exhibits polyreactivity and enhances protection against Salmonella infection. These findings highlight the specific interplay among dietary components, intestinal microbiota, and mucosal immunity, thereby establishing a diet-microbe-immune axis that shapes host defense in early life. This axis represents a promising therapeutic target for developing novel strategies to enhance resistance to enteric pathogens. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=170 HEIGHT=200 SRC="FIGDIR/small/669459v1_ufig1.gif" ALT="Figure 1"> View larger version (50K): org.highwire.dtl.DTLVardef@1ae8277org.highwire.dtl.DTLVardef@1f787ceorg.highwire.dtl.DTLVardef@1f51fd6org.highwire.dtl.DTLVardef@1fd3439_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIDietary soy promotes T follicular helper (Tfh) cell and IgA responses in the Peyers patches of weaning mice. C_LIO_LISoy enhances the colonization of two key commensals, Limosilactobacillus reuteri and Muribaculum intestinale, in the small intestine. C_LIO_LIThese two bacteria synergize to drive mucosal immunity: L. reuteri provides cognate antigens, while M. intestinale provides an adjuvant signal by promoting IL-1{beta} production from myeloid cells. C_LIO_LISoy-induced IgA is polyreactive and protects against Salmonella infection. C_LI

immunology↗

Modulation of prefrontal functional connectivity by anodal tDCS over left DLPFC predicts performance enhancement in competitive swimmers: A simultaneous tDCS-fNIRS, double-blind, sham-controlled crossover study

While transcranial direct current stimulation (tDCS) has been proposed as a method to enhance physical performance in athletes, the underlying neural mechanisms and the reasons for the widely reported individual variability in its effects remain unclear. This study investigated whether prefrontal hemodynamic responses, measured by functional near-infrared spectroscopy (fNIRS), are associated with the effects of anodal tDCS over the left dorsolateral prefrontal cortex (DLPFC) on swimming performance. In a double-blind, sham-controlled, crossover design, eight trained male swimmers performed 100 m freestyle trials under both anodal tDCS and sham conditions. We recorded prefrontal cortical activation and functional connectivity using fNIRS during a resting-state period and a subsequent stimulation period. While tDCS led to a numerical improvement in 100 m freestyle time, the overall effect was not statistically significant. The fNIRS analyses revealed that tDCS significantly reduced intra-hemispheric functional connectivity, especially in the stimulated left prefrontal cortex. Crucially, the magnitude of this connectivity reduction correlated with the degree of performance improvement, suggesting a direct brain-behavior link. Exploratory analyses further suggested that baseline functional connectivity could predict an individuals neural response to tDCS, with those having higher baseline connectivity showing a greater reduction. These findings suggest that tDCS over the left DLPFC may enhance physical performance by increasing the neural efficiency of prefrontal networks. Therefore, baseline functional connectivity is a promising physiological biomarker that could be used to personalize neuromodulation protocols in athletes.

neuroscience↗

A transfer RNA methyltransferase with an unusual domain composition catalyzes 2'-O-methylation at position 6 in tRNA.

Thermococcus kodakarensis tRNATrp contains 2'-O-methylcytidine at position 6 (Cm6). However, the tRNA methyltransferase responsible for the modification has not been identified. Using comparative genomics we predicted TK1257 as a candidate for the modification. Biochemical and mass spectrometry studies of purified recombinant TK1257 gene product show it to possess a tRNA methyltransferase activity for Cm6 formation. This protein has a highly unusual composition of domains, containing N-terminal ferredoxin-like, SPOUT catalytic and THUMP domains. Previous to this study, all known THUMP-related tRNA methyltransferases were shown to contain a Rossmann fold catalytic domain and the nucleosides they produced were N2-methylguanosine and/or N2, N2-dimethylguanosine. Therefore, our findings extend the knowledge of architecture of tRNA methyltransferases. We named the TK1257 gene product TrmTS and showed it can synthesize Am6 and Um6 as well as Cm6. A trmTS gene deletion strain showed slight growth retardation at high temperatures. Site-directed mutagenesis studies based on structural model revealed catalytically and structurally important amino acid residues in TrmTS and identified a TrmTS-specific linker is structurally essential. We showed that TrmTS recognizes the 3'-CCA terminal region and a stretch loop connected with at least two stems in RNA. Finally, we constructed a model of the binding between TrmTS and tRNA.

biochemistry↗

Directional statistical graphical modeling of phase-based connectivity

Identifying phase coupling from electrophysiological signals recorded by multiple electrodes, such as electroencephalogram (EEG) and electrocorticography (ECoG), helps neuroscientists and clinicians understand the underlying brain structures or mechanisms. From a statistical perspective, these signals are multi-dimensional circular measurements that are correlated with one another and can be effectively modeled using a torus graph model designed for circular random variables. Using the torus graph model avoids the issue of detecting spurious correlations. However, the naive estimation of this model tends to lead to a dense network structure, which is difficult to interpret. Therefore, to enhance the interpretability of the brain network structure, this paper proposes a sparse estimation method for the torus graph model using regularized score matching combined with information criteria. In numerical simulations, our method successfully recovered the true dependence structure from a synthetic dataset. Furthermore, we present analyses of two real datasets, one involving human EEG and the other marmoset ECoG, demonstrating that our method can be widely applied to phase-coupling analysis across different types of neural data. Using our proposed method, the modularity of the estimated network structure revealed more resolved brain structures and demonstrated differences in trends among individuals.

neuroscience↗

Database Chemistry for Genomics-Based Safety and Quality Evaluation of Biologics

Genomics-based safety and quality evaluation studies are advancing the bioindustry by enhancing various aspects, including viral safety, host cell protein (HCP) control, product heterogeneity control, cellular heterogeneity control, and process reproducibility. High-throughput instruments and genome-scale databases are essential in genomics, with the reference genome sequence being the most critical database. The completeness and accuracy of these genome sequences depend on DNA quality, sequencing instruments, read coverage, and assembly strategies. Significant efforts are being made to perfect genome assembly and continuously improve it. However, the quantitative impact of reference genome sequence accuracy on the safety of biologics is not yet fully understood. In this study, we compared and benchmarked six Chinese hamster genomes, including four newly sequenced genomes derived from Chinese hamster cell lines, from an industrial perspective. We also developed database assembly techniques to enhance the safety of biologics. We recommend using two or more independent reference genomes for viral safety studies. For HCP control, we suggest using protein sequences in which trypsin degradation peptides that overlap with high-risk proteins should be masked and unified. Additionally, we can predict microenvironments using single-cell transcriptome data. In bioengineering processes, any nucleotide samples have potential commercial benefits.

bioengineering↗

Dynamics of Fanconi anemia protein D2 in association with nuclear lipid droplet formation

Fanconi anemia (FA) is a rare genetic disease caused by the loss of function of one of the 22 associated genes and is characterized by bone marrow failure, cancer predisposition, and developmental defects. The proteins encoded by these genes (FA proteins) mainly function in DNA damage response and repair. Although FA deficiency has multiple effects on the regulation of lipid metabolism, the molecular function of FA proteins in the context of FA pathology remains unclear. In the present study, we demonstrated that FANCD2, a key component of FA proteins, interacts with lipid metabolism-related factors and that FANCD2 deficiency downregulates the cellular levels of fatty acids. Moreover, a portion of FANCD2 is localized to nuclear lipid droplets in response to oleic acid treatment. These subcellular dynamics are independent of FANCD2 monoubiquitination, which is essential for the DNA damage response. Collectively, these findings demonstrate that FANCD2 responds to not only DNA damage but also oleic acid exposure, providing insights into the pathogenesis of lipid dysregulation in FA.

cell biology↗

Association Between Relational Mobility and DNA Methylation in Oxytocin Receptor Gene: A Social Epigenetic Study

DNA methylation is a type of epigenetic modification known to exhibit fluctuations in response to environmental factors. The association of macrosocial factors, such as interpersonal mobility, on methylation has seldom been investigated. This study aimed to examine the association of relational mobility, defined as the extent to which individuals can form and replace social relationships, on the DNA methylation of oxytocin receptor genes. DNA was extracted from the buccal cells of 95 adult participants (50 men and 45 women) and subjected to microarray analysis of DNA methylation using Illumina EPIC v2.0. The findings indicate that the oxytocin receptor genes methylation level was higher in individuals residing in low relational mobility social environments. The CpG site associated with relational mobility is an enhancer region, indicating that social environments with low relational mobility exert a suppressive effect on the transcriptional efficiency of the oxytocin receptor gene. Significance StatementThe association between DNA methylation of the oxytocin receptor gene and relational mobility was examined in 95 adults in their 20s to 60s, and found that those living in social environments with lower levels of relationship mobility had higher rates of DNA methylation of the oxytocin receptor gene. This study is a novel approach to a problem discussed in the social sciences using new analytical techniques in epigenomics.

genetics↗

Genotype dependence of virulence-associated genes in ESBL-producing Escherichia coli isolated from the blood of patients with urinary tract infections

Approximately 80% of urinary tract infections (UTIs) are caused by uropathogenic Escherichia coli (UPEC). The prevalence of extended-spectrum {beta}-lactamase (ESBL)- producing E. coli in UPEC isolates belonging to specific multilocus sequence-type clones is a global concern. Relations between the pathogenicity of UPEC virulence factors and genotype have been discussed. However, the specific virulence factors and genotypes associated with a higher likelihood of causing UTIs remain unclear. This study analyzed the genotypes and virulence-associated genes of 46 ESBL-producing strains isolated from the blood of patients with UTIs who visited the Department of Emergency Medicine from 2017 to 2022 to elucidate the characteristics of UPEC strains associated with severe infections. Most phylogroups of clinical isolates were B2, except for D, found in three strains. The dominant multilocus sequence typing (MLST) was ST131, followed by ST73, ST95, and ST38, frequently observed in UPEC strains. ST131 strains were more resistant to levofloxacin (87.5%) than non-ST131 strains (50.0%) and caused fewer sepsis cases than non-ST131 strains. Based on in silico analysis, of 23 clinical isolates, the genes detected in all clinical strains could have important role in invasive UTIs. Clustering analysis highlighted the genotype MLST dependence of UPEC-specific virulence-associated genes. The absence of several UPEC-specific gene loci or the presence of ST38-specific indicated atypical repertories of virulence-associated genes in ST38 strains. Genes encoding secretion systems, which were found in enteropathogenic E. coli, were less detected in ST131 strains. These results suggested that the correlation of MLST and repertories should be considered to understand UPEC virulence. IMPORTANCE STATEMENTSeveral virulence genes, their diverse repertories depending on the strains, and various pathological indications complicate the pathogenicity of uropathogenic Escherichia coli (UPEC). The genes detected in all clinical isolates in this study would play a crucial role in UPEC pathogenicity. In contrast, depending on the genotype, the distribution of UPEC- specific genes and other pathogenic E. coli virulence genes in some genotype strains varied. Secretion system genes related to the pathogenicity of enteropathogenic E. coli (EPEC) were less in the strains of the most prevalent genotype, ST131; this was relevant to the number of sepsis cases. These results clearly indicated genotype dependencies on virulence-associated gene repertories and ambiguity in UPEC and EPEC. This study proposed that analyzing genotype-specific virulence factors and sharing virulence genes with EPEC will bring new insights into UPEC pathogenicity.

microbiology↗

A positive list administered immunity system restricts the body size of insects

There are several explanations for the extinction of ancient giant insects. Here, we present a new hypothesis suggesting that the innate immune system limits the body sizes of insects. In this study, we co-cultured bacteria, fungi, and insect blood cells, and performed single-cell RNA sequencing analyses of insect blood cells to determine their division of labor. In the innate immune system, prohibited molecules are listed as signals of invasion. The increasing diversity of organisms makes this list extensive. The burden of managing such an extensive list leads to a division of labor among blood cells and reduces the effective number of blood cells. Our simulation indicates that a reduced number of effective blood cells cannot protect a giant body from invaders.

immunology↗

Ras Activation by Hydrostatic Pressure is Enhanced by GAP and GEF in vitro

Hydrostatic pressure (HP) is a necessary stimulus for cell differentiation and growth in cultured chondrocytes. Assuming that Ras activation is involved in HP-induced reactions, if cellular Ras activity is increased by HP, Ras itself, Raf, Ras regulators including GTPase activating proteins (GAP) and guanine nucleotide exchange factors (GEF), then the upstream receptor and/or interactions between them should have HP sensitivity. Based on this hypothesis, we first attempted to examine whether Ras is activated by HP, and in the affirmative, identify which factors displayed HP sensitivity using an in vitro system to measure Ras activity. This in vitro system included mRaichu, a FRET-based Ras activity probe, to which two-point mutations were introduced to reduce Ras-independent signals. This improved Raichu was used to investigate the HP sensitivity of two components, the GAP domain (GAPd) derived from p120GAP and the GEF domain (GEFd) derived from hSOS-1. It was found that HP weakly activated Ras activity in the absence of GAPd and GEFd, presumably by facilitating GDP dissociation from Ras. A low concentration of GAPd enhanced HP-induced Ras activation by 16.3% whereas high concentrations of GAPd removed HP sensitivity, suggesting that HP partially dissociates GAPd from the GAPd-Ras-GDP complex and reduces the fraction of inactive Ras. Moreover, a broad concentration range of GEFd also enhanced HP-induced Ras activation. Given that HP also increased Ras activity under a condition mimicking cellular Ras activity, we propose that Ras activation is involved in the differentiation and growth stimulation of chondrocytes by HP. Statement of SignificanceThe Ras-cycle has been implicated in the regulation of growth and differentiation of eukaryotic cells. Here, we investigated the relationship between hydrostatic pressure (HP) and components of the Ras-cycle: Ras-Raf, the GAP domain, and the GEF domain. Generally, HP tends to weaken protein-protein and protein-ligand interactions, but in this study, a seemingly positive response was observed: HP-induced Ras activation. Additionally, this response was enhanced by the GEF domain and the GAP domain. Thus, given the multiple cellular functions of Ras and the responses of the Ras-cycle to HP, this study will help clarify the molecular mechanism by which HP modulates cellular functions, particularly in chondrocytes, which are subjected to repetitive HP stimuli in vivo.

biophysics↗

Uncovering the links between physical activity and prosocial behaviour: A functional near-infrared spectroscopy hyperscanning study on brain connectivity and synchrony

The prevalence of sedentary lifestyles in modern society raises concerns about their potential association with poor brain health, particularly in the lateral prefrontal cortex (LPFC), which is crucial for human prosocial behaviour. Here, we show the relationship between physical activity and prosocial behaviour, focusing on potential neural markers, including intra-brain functional connectivity and inter-brain synchrony in the LPFC. Forty participants, each paired with a stranger, underwent evaluation of neural activity in the LPFC using functional near-infrared spectroscopy hyperscanning during eye-to-eye contact and an economic game. Results showed that individuals with exercise habits and more leisure-time physical activity demonstrated greater reciprocity, less trust, longer decision-making time, and stronger intra-brain connectivity in the dorsal LPFC and inter-brain synchrony in the ventral LPFC. Our findings suggest that a sedentary lifestyle may alter human prosocial behaviour by impairing adaptable prosocial decision-making in response to social factors through altered intra-brain functional connectivity and inter-brain synchrony.

neuroscience↗

Selective plane activation structured illumination microscopy

Resolution enhancement in structured illumination microscopy is hindered when volumetric samples are observed owing to background signals from out-of-focus planes. In this study, we utilized selective plane illumination and reversibly photoswitchable fluorescent proteins to realize structured illumination within the focal plane and eliminate the out-of-focus background. We demonstrated high-resolution fluorescence imaging of volumetric samples, including dense fluorescent objects in a cell spheroid.

biophysics↗