Biology subjects

Lam, V. H.

Publications and source records attributed to Lam, V. H..

3 recordsLinked to original sources

bioRxiv2025

Mapping the Fascicular Morphology and Organization of the Human Sciatic Nerve via High-Resolution MicroCT Imaging

ObjectiveImplanted neuroprostheses can restore standing and walking after spinal cord injury and somatosensation after limb loss. Yet current approaches often fail to reliably activate hamstring muscles crucial for upright stability and mobility or to target afferent fibers for sensory restoration. We developed a novel methodology using high-resolution micro-computed tomography (microCT) to visualize and track fascicle groups innervating distinct hamstring muscles along the human sciatic nerve. This approach provides a framework for mapping fascicular topography in complex neural pathways to optimize standing neuroprostheses. MethodsBilateral sciatic nerves were dissected and excised from an embalmed human cadaver, annotated with branch names, and stained with phosphotungstic acid before undergoing microCT scanning at 11.4 m isotropic resolution. Images were segmented with a 3D U-Net convolutional neural network. Segmentation results were used to quantify morphological metrics and track fascicular organization along [~]25 cm of the nerve. MicroCT reconstructions were validated against histological cross sections. ResultsGross dissection revealed matched proximal-to-distal branching between left and right sciatic nerves: branch to long head of the biceps femoris (lhBF), branch to hamstring part of the adductor magnus and semimembranosus (HAM/SM), and branch to semitendinosus (ST). All branches originated medially and followed an inferomedial trajectory. Branch-free lengths of the sciatic exhibited asymmetry, especially between the lumbosacral roots to the first branch (5.5 cm left vs. 1.5 cm right) and lhBF to the HAM/SM branch (9.0 cm left vs. 16.5 cm right). MicroCT analysis revealed bilateral symmetry in fascicle diameters ([~]0.4 mm) and total fascicle counts ([~]84) but asymmetry in hamstring-innervating fascicle counts (left [~]7, right: [~]9). The 3D fascicular maps revealed that hamstring fascicles were located in the anteromedial portion of the sciatic nerve cross section and remained separate for distances up to 15.9 cm proximal to their branching points. SignificanceOur microCT-based approach enables efficient, high-resolution 3D mapping of fascicular organization within large, complex peripheral nerves like the sciatic nerve, overcoming previous technical limitations. This methodology informs development of neuroprostheses with improved hamstring muscle activation for enhanced standing function.

bioengineering↗

bioRxiv2024

Alternative splicing of clock transcript mediates the response of circadian clocks to temperature changes

Circadian clocks respond to temperature changes over the calendar year, allowing organisms to adjust their daily biological rhythms to optimize health and fitness. In Drosophila, seasonal adaptations and temperature compensation are regulated by temperature-sensitive alternative splicing (AS) of period (per) and timeless (tim) genes that encode key transcriptional repressors of clock gene expression. Although clock (clk) gene encodes the critical activator of clock gene expression, AS of its transcripts and its potential role in temperature regulation of clock function have not been explored. We therefore sought to investigate whether clk exhibits AS in response to temperature and the functional changes of the differentially spliced transcripts. We observed that clk transcripts indeed undergo temperature-sensitive AS. Specifically, cold temperature leads to the production of an alternative clk transcript, hereinafter termed clk-cold, which encodes a CLK isoform with an in-frame deletion of four amino acids proximal to the DNA binding domain. Notably, serine 13 (S13), which we found to be a CK1-dependent phosphorylation site, is among the four amino acids deleted in CLK-cold protein. Using a combination of transgenic fly, tissue culture, and in vitro experiments, we demonstrated that upon phosphorylation at CLK(S13), CLK-DNA interaction is reduced, thus decreasing CLK occupancy at clock gene promoters. This is in agreement with our findings that CLK occupancy at clock genes and transcriptional output are elevated at cold temperature, which can be explained by the higher amounts of CLK-cold isoforms that lack S13 residue. This study provides new insights into the complex collaboration between AS and phospho-regulation in shaping temperature responses of the circadian clock.

neuroscience↗

bioRxiv2018

Splice variants of DOMINO control Drosophila circadian behavior and pacemaker neuron maintenance

Circadian clocks control daily rhythms in physiology. In Drosophila, the small ventral lateral neurons (sLNvs) expressing PIGMENT DISPERSING FACTOR (PDF) are the master pacemaker neurons. Despite the importance of sLNvs and PDF in circadian behavior, little is known about factors that control sLNvs maintenance and PDF accumulation. Here, we identify the Drosophila SWI2/SNF2 protein DOMINO (DOM) as a key regulator of circadian behavior. Depletion of DOM eliminates morning anticipation and impairs rhythmicity. Interestingly, the two splice variants of DOM, DOM-A and DOM-B have distinct circadian functions. DOM-A depletion leads to arrhythmic behavior, while DOM-B knockdown lengthens circadian period. Both DOM-A and DOM-B bind to the promotor regions of key pacemaker genes period and timeless, and regulate their protein expression. Furthermore, we identify that DOM-A is required for the maintenance of sLNvs and transcription of pdf. Lastly, constitutive activation of PDF-receptor signaling rescued the arrhythmia and period lengthening of DOM downregulation. Taken together, our findings reveal that splice variants of DOM play distinct roles in circadian rhythms through regulating abundance of pacemaker proteins and sLNvs maintenance.

neuroscience↗