Biology subjects

Ghosh, S.

Publications and source records attributed to Ghosh, S..

21 records · Page 2Linked to original sources

bioRxiv2017

Activity based checkpoints ensure circuit stability in the olfactory system

Olfactory circuits function at birth, yet are continuously remodeled through the integration of adult-born interneurons into the olfactory bulb in a manner that preserves olfactory perceptual stability throughout adult life. The mechanisms that ensure appropriate circuit stability in this dynamic context remain poorly understood. Since interneurons sculpt the excitatory output of mitral and tufted (MT) neurons to the olfactory cortex, we predicted that MT neurons might instruct interneuron wiring in the adult brain. By blocking synaptic transmission from MT neurons we show that MT neuronal activity is critical to maintain olfactory bulb integrity and interneuron survival. Blocking interneuron death uncovered a second activity-dependent checkpoint regulating dendrite branching. In contrast, cortical circuits and MT neurons remain stable in the face of these silent and degenerating olfactory circuits. These studies identify a circuit-specific role for non-sensory activity in regulating integration of neurons into the adult brain, as predicted by previous computational models.

neuroscience↗

bioRxiv2017

Nitric oxide sensing by chlorophyll a

Nitric oxide (NO) acts as a signalling molecule that has direct and indirect regulatory roles in various functional processes in biology, though in plant kingdom its role is relatively unexplored. One reason for this is the fact that sensing of NO is always challenging. There are very few probes that can classify the different NO species. The present paper proposes a simple but straightforward way for sensing different NO species using chlorophyll, the source of inspiration being hemoglobin that serves as a NO sink in most mamalian system. The proposed method is able to classify NO from DETA-NONOate or (Z)-1-[N-(2-aminoethyl)-N-(2-ammonioethyl) amino] diazen-1-ium-1,2-diolate, nitrite, nitrate and S-nitrosothiol or SNO. This discrimination is carried out by chlorophyll a (chl a) at nano molar (nM) order of sensitivity and at 293K to 310K. Molecular docking reveals the differential binding behaviour of NO and SNO with chlorophyll, the predicted binding affinity matching with the experimental observation. Additional expreiments with diverse range of cyanobacteria reveals that apart from spectroscopic approach the proposed sensing module can be used in microscopic inspection of NO speices. Binding of NO is sensitive to tempertaure and static magnetic field. This provides additional support to the involvement of the porphyrin ring structure to the NO sensing process. This also broadens the scope of the sensing methods as hinted in the text.

bioengineering↗

bioRxiv2017

Repression of YdaS Toxin is Mediated by Transcriptional Repressor RacR in the cryptic rac prophage of Escherichia coli K12

AbstractHorizontal gene transfer is a major driving force behind the genomic diversity seen in prokaryotes. The rac prophage in E.coli K12 encodes a putative transcription factor RacR, whose deletion is lethal. We have shown that the essentiality of racR in E.coli K12 is attributed to its role in transcriptionally repressing a toxin gene called ydaS, which is coded adjacent and divergently to racR.

genetics↗