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Celikel, T.

Publications and source records attributed to Celikel, T..

At least 19 recordsLinked to original sources

Neuromodulatory Control of Cortical Function: Cell-Type Specific Regulation of Neuronal Information Transfer

Neuromodulatory systems such as dopamine and acetylcholine enable cortical circuits to rapidly shift between behavioral states, yet it remains unclear how receptor-specific signaling reshapes what single neurons compute. Here we combined whole-cell recordings from excitatory and inhibitory neurons in layer 2/3 of mouse somatosensory cortex with information-theoretic analyses under frozen-noise stimulation. We quantified stimulus-to-spike information transfer and profiled each neuron across four functional domains: passive membrane biophysics, action potential dynamics, intrinsic adaptation currents, and input feature selectivity captured by spike-triggered averages. Activation of D1, D2, or M1 receptors produced cell-type and receptor-specific changes in fractional information and firing output, demonstrating that neuromodulators regulate encoding beyond simple gain control. Unsupervised clustering revealed that receptor activation reshapes neuronal functional identities, consistent with a dynamic computational phenotype. To identify the organizing principle underlying these transitions, we applied multi-set correlation and factor analysis and found that neuromodulation systematically reorganizes covariance among functional domains. In excitatory neurons, dopaminergic activation led to a decreased coordination between input feature selectivity and other functional properties while strengthening coordination among response based features such as spike dynamics and adaptation. Inhibitory neurons, by contrast, generally exhibited increased coordination across domains. These findings identify neuromodulation as a reconfiguration signal that reshapes not only individual cellular properties but also the architecture linking them, thereby dynamically expanding the computational repertoire of cortical circuits.

neuroscience↗

Evolutionarily Optimized Network Topology as a Structural Prior for Data-Efficient Sparse Neural Classification

Biological neural systems have been refined over millions of years of evolutionary optimization to maximize information processing under metabolic and developmental constraints, yielding network topologies with characteristic structural signatures: sparse connectivity, small-world organization, and modular architecture. Whether these evolutionarily derived structural properties constitute transferable inductive biases for artificial learning systems is unknown. Here we test this hypothesis directly by initializing sparse multilayer perceptrons from biologically derived adjacency matrices spanning molecular, structural, functional, and behavioral interaction networks and comparing their performance against synthetic alternatives matched for sparsity but lacking evolutionary structural organization. Biologically pre-initialized networks consistently outperformed both fully connected baselines and synthetic sparse alternatives across four classification benchmarks, achieving approximately 90% classification accuracy with as little as 25% of available training data. Systematic comparisons against randomly rewired, degree-preserved, and Watts-Strogatz small-world networks with matched sparsity establish that topology, not connection density, drives these advantages: higher-order structural features encoded by evolutionary optimization, including local clustering, modular organization, and hub connectivity, provide inductive biases unavailable from random sparse graphs. These findings establish evolutionarily optimized network topology as a principled structural prior for artificial neural architectures, with direct implications for neuromorphic computing, edge-deployed machine learning, and the broader program of brain-inspired artificial intelligence. Significance StatementBiological nervous systems and gene regulatory networks have been shaped by millions of years of evolution to generalize efficiently from limited experience under tight resource constraints, precisely the challenge that confronts machine learning systems in data-scarce settings. We show that the global wiring topology produced by this evolutionary process can be transplanted directly into artificial classifiers to confer substantial data efficiency: networks pre-wired from biological blueprints achieve approximately 90% classification accuracy using only a fraction of the training data required by conventional architectures. The advantage cannot be explained by sparsity alone, the evolutionarily shaped organization of those connections is the active ingredient. Evolution, it appears, has solved a version of the sparse learning problem that artificial intelligence is still working on.

neuroscience↗

From Skin to Cortex: End-to-End Spiking Neural Network Simulation of Tactile Information Flow

Autonomous systems and neuroprosthetic devices demand real-time tactile processing under strict energy and latency constraints. Designing these systems using neuromorphic principles, where communication is event-based and node activity is sparse, could improve their speed and energy efficiency. Here we present an end-to-end spiking neural network model of the ascending tactile pathway, from mechanoreceptors in the skin in humans (or whisker follicles in rodents) to cortical neurons, that operates in an event-driven neuromorphic fashion. The model comprises distinct anatomical stages, (1) three types of mechanoreceptor afferents, (2) trigeminal ganglion, (3) brainstem, (4) thalamic nucleus, and (5) three cortical layers, connected in a feed-forward hierarchy. We demonstrate the models responses to both rodent whisker deflection and human fingertip skin displacement, using information-theoretic analysis, pairwise correlation, and stimulus decoding at each layer. Our results show that tactile information is efficiently encoded and transformed at each stage: stimulus features are represented with high fidelity and reduced redundancy as signals ascend. Notably, simple linear or Bayesian decoders can reliably classify stimulus features from single-neuron activity in the thalamus and cortex for low-noise inputs, highlighting the emergence of robust neural representations. This open-source model is the first to include the mechanosensory periphery in a full tactile pathway simulation, enabling researchers to study how perturbations at any stage affect tactile encoding. Moreover, the network is well-suited for deployment on low-power, real-time neuromorphic hardware, facilitating the development of multi-layer signal processing and tactile navigation algorithms.

neuroscience↗

Stability and Adaptability in Balance: A Dual Mechanism for Metaplasticity in Cortical Networks

1.Circuit dynamics arise from the interaction between the networks connectivity structure and intrinsic neuronal nonlinearities, yet the roles of key structural parameters -- synaptic weight (W) and connection probability (P) -- are usually examined in simplified network models. Using a biologically grounded, multilayer spiking model of thalamocortical microcircuitry, incorporating conductance-based neurons and rodent somatosensory cortex connectivity, we systematically scaled W and P and identified four organising principles of population dynamics. First, stronger synapses monotonically amplified spiking across all populations. Second, increasing connection density produced a weight-dependent bidirectional outcome: adding weak synapses preserved baseline activity, whereas adding strong ones suppressed firing. Third, concurrent increases in W and P yielded sublinear effects, where population activity increased less than expected from the sum of their individual impacts. Fourth, two functional neuronal classes emerged -- scaling-invariant neurons that reliably transmitted thalamic input across connectivity regimes, and variant neurons that spiked selectively under specific connectivity scales. These classes differed in their excitation-inhibition balance, shaped by the strength of recurrent inhibition. Together, our findings show that synaptic weight and connection probability work in concert to define cortical operating regimes and generate the functional diversity in neuronal responses that supports flexible computation.

neuroscience↗

NeuroCarta: An Automated and Quantitative Approach to Mapping Cellular Networks in the Mouse Brain

Understanding the structural organization of the brain is essential for deciphering how complex functions emerge from neural circuits. The Allen Mouse Brain Connectivity Atlas (AMBCA) has revolutionized our ability to quantify anatomical connectivity at a mesoscale resolution, bridging the gap between microscopic cellular interactions and macroscopic network organization. To leverage AMBCA for automated network construction and analysis, here we introduce NeuroCarta, an open-source MATLAB toolbox designed to extract, process, and analyze brain-wide connectivity networks. NeuroCarta generates directed and weighted connectivity graphs, computes key network metrics, and visualizes topological features of brain circuits. As an application example, using NeuroCarta on viral tracer data from the AMBCA, we demonstrate that the mouse brain exhibits a densely connected architecture, with a degree of separation of approximately four synapses, suggesting an optimized balance between local specialization and global integration. We identify attractor nodes that may serve as key convergence points in brain-wide neural computations and show that NeuroCarta facilitates comparative network analyses, revealing regional variations in projection patterns. While the toolbox is currently constrained by the resolution and coverage of the AMBCA dataset, it provides a scalable and customizable framework for investigating brain network topology, interregional communication, and anatomical constraints on mesoscale circuit organization.

neuroscience↗

Understanding Neuronal Diversity: Role of Input Dynamics and Selectivity

Neuronal classification based on morphology, electrophysiology, and molecular markers is often considered static. Here, we challenge this view, showing that functional classification depends on input patterns. Using single-cell recordings from layer 2/3 barrel cortex neurons in mice, we compared responses to step-and-hold versus dynamic frozen noise inputs that mimic presynaptic activity. Action potential and waveform-based classifications varied significantly, highlighting the dynamic nature of neuronal identity. To assess the contribution of input versus neuronal attributes toward classification, we analyzed four attribute sets, namely action potential, passive biophysical, adaptation currents, and linear input filters derived via spike-triggered averages (STA). Our findings revealed that the STA, which captures a neurons selective responsiveness to presynaptic activity, explained the most variance within the population. This highlights input-driven dynamics as key to functional identity, emphasizing the need for physiologically relevant inputs in defining neuronal classes and shifting the focus from static properties to dynamic functional diversity.

neuroscience↗

Electrical diversity of neurons in sensory cortices

The classification of neuronal types is a complex task with numerous molecular, anatomical, and functional (electrical) features have been identified as informative in discriminating neuronal populations. The functional characterization of neurons has traditionally been carried out with predefined sets of parameters such as firing rate and action potential generation threshold. Here we provide an objective method to choose what parameters are most informative about a neurons functional cell type. Using this method we show that despite the significant molecular and anatomical variability across neurons, functional characterization of neuronal activity identifies 9 and 11 distinct neuronal subpopulations in the upper layers of the somatosensory and visual cortices respectively. This novel classification method will help to unravel the functional (electrophysiological) diversity of cellular classes throughout the nervous system. Further, the thorough comparison between the different classes of cells will provide a solid building block for the study of the sensory cortices.

neuroscience↗

Where top-down meets bottom-up: Cell-type specific connectivity map of the whisker system

Sensorimotor computation integrates bottom-up world state information with top-down knowledge and task goals to form action plans. In the rodent whisker system, a prime model of active sensing, evidence shows neuromodulatory neurotransmitters shape whisker control, affecting whisking frequency and amplitude. Since neuromodulatory neurotransmitters are mostly released from subcortical nuclei and have long-range projections that reach the rest of the central nervous system, mapping the circuits of top-down neuromodulatory control of sensorimotor nuclei will help to systematically address the mechanisms of active sensing. Therefore, we developed a neuroinformatic target discovery pipeline to mine the Allen Institutes Mouse Brain Connectivity Atlas. Using network connectivity analysis, we identified new putative connections along the whisker system and anatomically confirmed the existence of 42 previously unknown monosynaptic connections. Using this data, we updated the sensorimotor connectivity map of the mouse whisker system and developed the first cell-type-specific map of the network. The map includes 157 projections across 18 principal nuclei of the whisker system and neuro-modulatory neurotransmitter-releasing. Performing a graph network analysis of this connectome, we identified cell-type specific hubs, sources, and sinks, provided anatomical evidence for monosynaptic inhibitory projections into all stages of the ascending pathway, and showed that neuromodulatory projections improve network-wide connectivity. These results argue that beyond the modulatory chemical contributions to information processing and transfer in the whisker system, the circuit connectivity features of the neuromodulatory networks position them as nodes of sensory and motor integration.

neuroscience↗

TITAN: A Toolbox for Information-Theoretic Analysis of Molecular Networks

Biological systems are naturally described as networks, spanning molecular interactions, cellular circuits, and brain-wide functional connectivity. Despite the ubiquity of network data, workflows for inferring network structure and then applying comparable graph analyses across modalities remain fragmented. We present NETSCOPE, an open-source, multi-platform toolbox for information-theoretic network inference and analysis. NETSCOPE estimates pairwise statistical dependence with mutual information (MI), derives weighted adjacency matrices, removes likely spurious edges using shuffle-based thresholds, and prunes indirect connections using the data processing inequality (DPI). A key feature is the conversion of MI-based similarity into a metric space via (normalized) variation of information (VI), enabling weighted shortest-path and centrality analyses that require distance-like edge weights. We validate the toolbox on synthetic data with known ground-truth topology and by reconstructing published molecular networks in Saccharomyces cerevisiae. We further demonstrate cross-domain use cases in single-cell transcriptomic networks, cell-level anatomical maps, EEG connectivity, and resting-state fMRI. NETSCOPE runs in Python and MATLAB/Octave, and is compatible with Jupyter/Colab workflows.

bioinformatics↗

Nonlinear super-resolution signal processing for subcellular analysis of calcium dynamics

Fluorescence imaging of calcium dynamics has revolutionized cellular biology, and especially neuroscience as it allows the study of neural activity across spatially well defined populations. Quantification of fluorescence signals is commonly performed using ratiometric measures. These measures, such as {Delta}F/F, are easy to implement, but they depend on the definition of a baseline, which is often not trivial outside of the measurement of evoked responses, and needs to be defined for every cell (or other cellular compartment) separately. Here, we present a new quantitative measure of fluorescence by taking advantage of the time dimension of the signal. The new method, which we named ARES (Autoregressive RESiduals), is based on the quantification of residuals after linear autoregression and does not require arbitrary baseline assignment. We detail the basic characteristics of the ARES signal, compare it against {Delta}F/F, and quantify the improvement in spatial and temporal resolution of recorded calcium data. We further exemplify its utility in the study of intracellular calcium dynamics by describing the propagation of a calcium wave inside a dendrite. As a robust and accurate method for quantifying fluorescence signals, ARES is particularly well-suited for the study of spontaneous as well as evoked calcium dynamics, subcellular localization of calcium signals, and spatiotemporal tracking of calcium dynamics. HighlightsO_LIA baseline-free quantitative measure of fluorescence is introduced C_LIO_LIThe method, called ARES, is based on autoregression C_LIO_LIARES improves the spatiotemporal resolution of calcium imaging recordings C_LIO_LIIts utility for the localization and spatiotemporal tracking of calcium is shown C_LI

neuroscience↗

A whole-cell recording database of neuromodulatory action in the adult neocortex

BackgroundThe recent release of two large intracellular electrophysiological databases now allows high-dimensional systematic analysis of mechanisms of information processing in the neocortex. Here, to complement these efforts, we introduce a freely and publicly available database that provides a comparative insight into the role of various neuromodulatory transmitters in controlling neural information processing. FindingsA database of in vitro whole-cell patch-clamp recordings from primary somatosensory and motor cortices (layers 2/3) of the adult mice (2-15 months old) from both sexes is introduced. A total of 464 current-clamp experiments from identified excitatory and inhibitory neurons are provided. Experiments include recordings with (i) Step-and-Hold protocol during which the current was transiently held at 10 steps, gradually increasing in amplitude, (ii) "Frozen Noise" injections that model the amplitude and time-varying nature of synaptic inputs to a neuron in biological networks. All experiments follow a within neuron across drug design which includes a vehicle control and a modulation of one of the following targets in the same neuron: dopamine and its receptors D1R, D2R, serotonin 5HT1f receptor, norepinephrine Alpha1, and acetylcholine M1 receptors. ConclusionsThis dataset is the first to provide a systematic and comparative insight into the role of the selected neuromodulators in controlling cellular excitability. The data will help to mechanistically address how bottom-up information processing can be modulated, providing a reference for studying neural coding characteristics and revealing the contribution of neuromodulation to information processing.

neuroscience↗

Simultaneous Detection of Dopamine and Serotonin on Carbonized Micropipette Decorated with Carbon Nanotubes

Graphite-based materials, like pyrolyzed carbon electrodes, are widely used as implantable electrochemical sensors, for the detection of neurotransmitters, neuromodulators, and gaseous species, thanks to their strong mechanical properties, superior electron-transfer kinetics, and in-vivo stability. Electrochemical properties of graphite can be improved by coating them with carbon nanotubes (CNTs) which improves sensitivity, selectivity, and resistance to biofouling. Although several types of electrodes have been developed to detect biologically relevant targets like monoamines, multiplexed sensing of dopamine and serotonin is not yet widely available. Herein we introduce pyrolyzed carbon electrodes coated with CNTs for fast scan cyclic voltammetry for simultaneous detection of dopamine and serotonin with a sensitivity of 52{+/-}8nA/M and 5{+/-}17nA/M, respectively. Serotonin shows a broad oxidation peak at 0.68V{+/-}0.12V. When dopamine and serotonin are probed simultaneously at 10 Hz, dopamine oxidizes at 0.1V{+/-} 0.1 and serotonin oxidizes at 0.78V{+/-}0.12 and dopamine reduces at -0.35V{+/-}0.1 and serotonin at 0.1V{+/-}0.2 V. Thus the sensors shows discrimination between dopamine and serotonin and are suitable for simultaneous detection of these monoamines.

biochemistry↗

Electrochemical Detection of Adrenaline and Hydrogen Peroxide on Carbon Nanotube Electrodes

Adrenaline and hydrogen peroxide have neuromodulatory functions in the brain. Considerable interest exists in developing electrochemical sensors that can detect their levels in vivo due to their important biochemical roles. Challenges associated with electrochemical detection of hydrogen peroxide and adrenaline are that the oxidation of these molecules usually requires highly oxidising potentials (beyond 1.4 V vs Ag/AgCl) where electrode damage and biofouling are likely and the signals of adrenaline, hydrogen peroide and adenosine overlap. To address these issues we fabricated pyrolysed carbon electrodes coated with oxidised carbon nanotubes (CNTs). Using these electrodes for fast-scan cyclic voltammetric (FSCV) measurements showed that the electrode offers reduced overpotentials compared with graphite and improved resistance to biofouling. The Adrenaline peak is reached at 0.75({+/-}0.1) V and reduced back at -0.2({+/-}0.1) V while hydrogen peroxide is detected at 0.85({+/-}0.1) V on this electrode. The electrodes are highly sensitive with a sensitivity of 16nA {micro}M-1 for Adrenaline and 11nA {micro}M-1 for hydrogen peroxide on an 80 {micro}m2 electrode. They are also suitable to distinguish between adrenaline, hydrogen peroxide and adenosine thus these probes can be used for multimodal detection of analytes.

neuroscience↗

Principles of Dopamine Binding to Carbon Surfaces

Fast Scan Cyclic Voltammetry (FSCV) combined with carbon electrodes is considered as the gold standard method for real-time detection of oxidizable neurotransmitters. The bioinert nature, rapid electron transfer kinetics and long-term stability make carbon an attractive material for probing brain electrochemistry. Herein, we first demonstrate a rapid fabrication process of carbonized nanopipettes and subsequently perform experimental measurements and theoretical simulations to study mechanisms of dopamine binding on carbonized surfaces. To explain the kinetics of dopamine oxidation on carbonized electrodes we adapted the electron-proton transfer model originally developed by Compton and found that the electron-proton transfer model best explains the experimental observations. We further investigated the electron-proton transfer theory by constructing a Density Function Theory (DFT) for visualization of dopamine binding to graphite-like surfaces consisting of heteroatoms. For graphite surfaces that are capped with hydrogen alone, we found that dopamine is oxidized, whereas, on graphite surfaces doped with heteroatoms such as nitrogen and oxygen, we found deprotonation of dopamine along with oxidation thus validating our experimental and theoretical data. These observations provide mechanistic insights into multistep electron transfer during dopamine oxidation on graphite surfaces. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=186 SRC="FIGDIR/small/457508v1_ufig1.gif" ALT="Figure 1"> View larger version (29K): org.highwire.dtl.DTLVardef@8bee9corg.highwire.dtl.DTLVardef@de66ecorg.highwire.dtl.DTLVardef@1373032org.highwire.dtl.DTLVardef@3d61d0_HPS_FORMAT_FIGEXP M_FIG A: Pictorial view of the experimental setup of carbonized electrodes. The application of waveform causes the oxidation of dopamine. B. Background subtracted voltammogram of dopamine, wherein the waveform applied is -0.4V to 1.3V and cycled back at -0.4V at 200 V s-1 at 10 Hz. C: A hotspot showing the oxidation and reduction of dopamine, wherein two distinct redox spots can be seen. The first redox spot can be seen at 0.0V and the second one at 0.5V. Thus showing a multistep electron transfer for dopamine. D: A DFT model for dopamines interaction with graphite surfaces doped with nitrogen atoms. Oxidation of oxygen (red) can be seen with loss of protons. C_FIG

biochemistry↗

Carbon Nanotube Electrodes for Electrochemical Detection of Dopamine

Carbon nanotubes (CNTs) are suited for neurochemistry because of their biological inertness, ability to withstand biofouling, and superior electron transport kinetics. Dopamine, the canonical monoaminergic neuromodulator, contributes to reward, cognition and attention, however, its detection in real-time is challenging due to its low basal concentration in the brain (100nM L-1). In our present work, we fabricate pyrolytic carbon electrodes and perform a CNT coating to improve the electrochemical kinetics of dopamine. Upon CNTs coating, dopamine shows a sensitivity of 9{+/-}18nA/M for a cylindrical electrode having a mean surface diameter of 8{+/-}4m. Increasing the scan frequency from 10-100 Hz shows that dopamine electron transfer kinetics improves; wherein dopamine is oxidized at 0.35{+/-}0.09V and reduced to -0.10{+/-}0.05V for 10 Hz. Increasing the frequency results in a shift of oxidation peak towards the anodic region, wherein dopamine oxidizes at 0.08{+/-}3V and reduces at -0.1{+/-}0.05V for 100 Hz, thus showing that dopamine redox is reversible which can be attributed to the superior electron transport kinetics of CNTs. The sensor was able to distinguish dopamine signals against other neurochemicals like serotonin and foulant 3,4-Dihydroxyphenylacetic acid (DOPAC). The minimum chemical detection that can be performed using these nanopipettes is 50{+/-}18nM L-1, which is well below the physiological concentrations of dopamine in the brain. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=185 SRC="FIGDIR/small/457511v1_ufig1.gif" ALT="Figure 1"> View larger version (34K): org.highwire.dtl.DTLVardef@bf710aorg.highwire.dtl.DTLVardef@966bcforg.highwire.dtl.DTLVardef@1800530org.highwire.dtl.DTLVardef@1d4a37e_HPS_FORMAT_FIGEXP M_FIG A: Pictorial view of background-subtracted voltammetry. The waveform used was -0.4V to 1.3 V and cycled back to -0.4V at 10 Hz. B: The voltammogram was converted as a 2-D representation, into current, voltage, and repetition to understand the dopamine oxidation. C: Background subtracted voltammetry for dopamine using 100 Hz waveform. D: The 2-D representation of current, voltage, and repetition. C_FIG

biochemistry↗

Information transfer and recovery for the sense of touch

Transformation of postsynaptic potentials (PSPs) into action potentials (APs) is the rate-limiting step of communication in neural networks. The efficiency of this intracellular information transfer also powerfully shapes stimulus representations in sensory cortices. Using whole-cell recordings and information-theoretic measures, we show herein that somatic PSPs accurately represent stimulus location on a trial-by-trial basis in single neurons even 4 synapses away from the sensory periphery in the whisker system. This information is largely lost during AP generation but can be rapidly (<20 ms) recovered using complementary information in local populations in a cell-type-specific manner. These results show that as sensory information is transferred from one neural locus to another, the circuits reconstruct the stimulus with high fidelity so that sensory representations of single neurons faithfully represent the stimulus in the periphery, but only in their PSPs, resulting in lossless information processing for the sense of touch in the primary somatosensory cortex.

neuroscience↗

Cell type specific information transfer for sparse coding

Sensory neurons reconstruct the world from action potentials (spikes) impinging on them. To effectively transfer information about the stimulus to the next processing level, a neuron needs to be able to adapt its working range to the properties of the stimulus. Here, we focus on the intrinsic neural properties that influence information transfer in cortical neurons and how tightly their properties need to be tuned to the stimulus statistics for them to be effective. We start by measuring the intrinsic information encoding properties of putative excitatory and inhibitory neurons in L2/3 of the mouse barrel cortex. Excitatory neurons show high thresholds and strong adaptation, making them fire sparsely and resulting in a strong compression of information, whereas inhibitory neurons that favour fast spiking transfer more information. Next, we turn to computational modelling and ask how two properties influence information transfer: 1) spike-frequency adaptation and 2) the shape of the IV-curve. We find that a subthreshold (but not threshold) adaptation, the h-current, and a properly tuned leak conductance can increase the information transfer of a neuron, whereas threshold adaptation can increase its working range. Finally, we verify the effect of the IV-curve slope in our experimental recordings and show that excitatory neurons form a more heterogeneous population than inhibitory neurons. These relationships between intrinsic neural features and neural coding that had not been quantified before will aid computational, theoretical and systems neuroscientists in understanding how neuronal populations can alter their coding properties, such as through the impact of neuromodulators. Why the variability of intrinsic properties of excitatory neurons is larger than that of inhibitory ones is an exciting question, for which future research is needed. Author summaryIntracellular information transfer from synaptic input to output spike train is necessarily lossy. Here, we explicitly measure the mutual information between a neurons input and spike output and show that information transfer is more lossy and heterogeneous for excitatory than for inhibitory neurons. By using computational modelling we show that the shape of the input-output curve as well as how fast a neuron adapts to its input collectively determine the rate of information loss. These insights will help both experimentalists and modellers in designing and simulating experiments that investigate how network coding properties can adapt to the environment, for instance through the effects of neuromodulators.

neuroscience↗

Cortical representation of touch in silico

With its six layers and ~12000 neurons, a cortical column is a complex network whose function is plausibly greater than the sum of its constituents. Functional characterization of its network components will require going beyond the brute-force modulation of the neural activity of a small group of neurons. Here we introduce an open-source, biologically inspired, computationally efficient network model of the somatosensory cortexs granular and supragranular layers after reconstructing the barrel cortex in soma resolution. Comparisons of the network activity to empirical observations showed that the in silico network replicates the known properties of touch representations and whisker deprivation-induced changes in synaptic strength induced in vivo. Simulations show that the history of the membrane potential acts as a spatial filter that determines the presynaptic population of neurons contributing to a post-synaptic action potential; this spatial filtering might be critical for synaptic integration of top-down and bottom-up information.

neuroscience↗