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Bando, K.

Publications and source records attributed to Bando, K..

3 recordsLinked to original sources

Observation of Field Cancerization in Human Breast Tissue with Raman Hyperspectral Imaging and Artificial Neural Networks

Tissue-conserving partial mastectomy surgeries are often used to treat breast cancer, in which malignancies and surrounding margin tissues are removed. Morphologies of margin tissues are often assessed intraoperatively by a histopathologist, requiring excision and time-consuming preparation for microscopic examination. Changes in morphology often appear only after the mutation of cells involved in tumor propagation, suggesting that margins and perhaps conserved tissue may already contain cancer-converted cells prior to morphological changes. In a process known as field cancerization (FC), benign tissue surrounding a malignancy is affected by continued exposure to carcinogens, triggering cancer-promoting alterations like conversions of normal adipocytes and fibroblasts to cancer-associated adipocytes and fibroblasts. We report successful FC detection in human breast tissue samples excised during breast-conserving surgeries in human patients using Raman hyperspectral imaging and artificial neural networks (ANNs). Spectra in the images are segmented based on tissue modalities such as adipose, connective, and glandular tissues using intensities at Raman shifts of known molecules and label propagation, a method of transductive learning. ANNs that discriminate cancer from noncancer spectra return high quality (>95% accuracy) and reproducible distinction of spectra originating from cancerous tissue at high signal-to-error ratios (S/Es). Good distinction is returned in all modalities, with adipose-rich modalities returning the most reliable classifications, suggesting reliable discrimination of normal and cancer-associated adipocytes. Spectral S/Es are increased using larger spectral measurement areas, but this causes spectral mixing across different tissue modalities and significant biological variation, failing to deliver a corresponding increase in classification quality.

cancer biology↗

Selective plane activation structured illumination microscopy

Resolution enhancement in structured illumination microscopy is hindered when volumetric samples are observed owing to background signals from out-of-focus planes. In this study, we utilized selective plane illumination and reversibly photoswitchable fluorescent proteins to realize structured illumination within the focal plane and eliminate the out-of-focus background. We demonstrated high-resolution fluorescence imaging of volumetric samples, including dense fluorescent objects in a cell spheroid.

biophysics↗

Fluid flow-induced left-right asymmetric decay of Dand5 mRNA in the mouse embryo requires Bicc1-Ccr4 RNA degradation complex

Molecular left-right (L-R) asymmetry is established at the node of the mouse embryo as a result of the sensing of a leftward fluid flow by immotile cilia of perinodal crown cells and the consequent degradation of Dand5 mRNA on the left side. We here examined how the fluid flow induces Dand5 mRNA decay. We found that the 3 untranslated region (3-UTR) of Dand5 mRNA is necessary and sufficient for the left-sided decay and is responsive to the flow direction, loss of the cation channel Pkd2, and Ca2+. The 200-nucleotide proximal-most portion of the 3-UTR, which is conserved among mammals, is essential for the asymmetric mRNA decay and binds Bicc1, an RNA binding protein specifically expressed at the node. Bicc1 preferentially recognizes GAC and GACR sequences in RNA, and these motifs are enriched in the 200-nucleotide region of the Dand5 3-UTR. The Cnot3 component of the Ccr4-Not deadenylase complex interacts with Bicc1 and is also required for Dand5 mRNA decay at the node. Our results thus suggest that leftward fluid flow induces binding of Bicc1 to the 3-UTR of Dand5 mRNA in crown cells on the left side of the node, and that consequent recruitment of Ccr4-Not mediates mRNA degradation.

developmental biology↗