Finding dugongs through environmental DNA: a complementary tool for population surveillance

Aul, L.; Clegue, C.; Burrows, D.; Martin, J. L.; Mathews, D.; Widdicombe, S.; Stahl, H.; Strugnell, J.; Havermans, C.; Villacorta-Rath, C.

doi:10.64898/2026.09.30.755531

bioRxiv · 10.64898/2026.09.30.755531

Finding dugongs through environmental DNA: a complementary tool for population surveillance

Aul, L.·Clegue, C.·Burrows, D.·Martin, J. L.·Mathews, D.·Widdicombe, S.·Stahl, H.·Strugnell, J.·Havermans, C.·Villacorta-Rath, C.

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Abstract

Detecting dugongs at low densities remains a major challenge for conservation monitoring, particularly in remote or turbid coastal habitats where conventional surveys are difficult. Environmental DNA (eDNA) offers a complementary approach, but robust species-specific tools are needed before it can be confidently applied to dugong surveillance. We developed and analytically validated a quantitative PCR TaqMan assay for detecting dugong (Dugong dugon) eDNA and evaluated its performance across controlled aquarium conditions in Australia and Abu Dhabi, and wild populations in northern Australia and the Arabian/Persian Gulf. The assay detected dugong eDNA in aquarium and field samples, with Sanger sequencing confirming amplification of dugong mitochondrial DNA from positive field detections. Our assay provides a robust and geographically transferable tool for targeted dugong eDNA detection, performing reliably across contrasting coastal environments and widely separated populations. This approach can strengthen local-scale surveillance of low-density or difficult-to-detect dugong populations.

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Aul, L., Clegue, C., Burrows, D., Martin, J. L., Mathews, D., Widdicombe, S., Stahl, H., Strugnell, J., Havermans, C., Villacorta-Rath, C.. 2026-10-01. Finding dugongs through environmental DNA: a complementary tool for population surveillance. https://doi.org/10.64898/2026.09.30.755531

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