Refractive index modulation by ultraviolet absorption of canonical amino acids for in vivo optical transparency

Hong, G.; Zhao, S.; Liu, Z.; Zhang, L.-Y.; Hou, X.; Baghdasaryan, A.; Cui, H.; Crunkleton, V.; Keck, C.; Myung, D.; Yang, T.; Casey, K. M.; Witschen, P.

doi:10.64898/2026.08.22.746458

bioRxiv · 10.64898/2026.08.22.746458

Refractive index modulation by ultraviolet absorption of canonical amino acids for in vivo optical transparency

Hong, G.·Zhao, S.·Liu, Z.·Zhang, L.-Y.·Hou, X.·Baghdasaryan, A.·Cui, H.·Crunkleton, V.·Keck, C.·Myung, D.·Yang, T.·Casey, K. M.·Witschen, P.

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Abstract

The inherent opacity of most mammalian tissues limits deep-tissue optical imaging and light delivery. In contrast, the natural transparency of certain species and ocular tissues has been hypothesized to involve proteins with unusually high refractive indices. Here, we systematically analyze the ultraviolet absorption and visible-range refractive index modulation of canonical amino acids to identify key contributors to high-refractive index proteins. We identify arginine as a leading candidate, combining strong ultraviolet absorption, efficient refractive index modulation, physiological pH, and biocompatibility. These properties are validated through successful achievement of optical transparency in both ex vivo and in vivo tissues. Our findings establish a foundation for using abundant endogenous biomolecules to achieve in vivo tissue transparency and suggest a strategy for engineering proteins enriched in high-performing amino acids to enable efficient, biocompatible tissue clearing.

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Hong, G., Zhao, S., Liu, Z., Zhang, L.-Y., Hou, X., Baghdasaryan, A., Cui, H., Crunkleton, V., Keck, C., Myung, D., Yang, T., Casey, K. M., Witschen, P.. 2026-08-26. Refractive index modulation by ultraviolet absorption of canonical amino acids for in vivo optical transparency. https://doi.org/10.64898/2026.08.22.746458

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