High-throughput dual bioreporter screening reveals distributed regulation of biofilm matrix components in Staphylococcus aureus

Abstract

Staphylococcus aureus biofilm formation is a key factor enabling persistent infections. However, the lack of efficient high-throughput tools previously limited systematic study of its regulatory mechanisms. Here, we used high-efficiency transduction to construct two luminescent bioreporter libraries, each probing a distinct biofilm regulatory pathway. Derived from the Nebraska Transposon Mutant Library, these libraries enabled rapid, quantitative screening of biofilm-associated gene expression in a high-throughput format. Our screens revealed a surprising lack of overlap in the regulation of the two biofilm components investigated: adhesin synthesis and extracellular DNA production. However, we identified mntR as a key gene involved in the expression of both biofilm components and confirmed the previously reported role of yjbH. Cross-lineage validation showed that these regulators retain conserved significance across multiple S. aureus backgrounds, although their phenotypic effects varied across strains. Collectively, this work provides a versatile, high-throughput framework to dissect the regulatory networks underlying complex phenotypes in S. aureus. ImportanceBiofilm formation is a major contributor to the persistence and treatment failure of Staphylococcus aureus infections, yet its regulatory network remains incompletely understood. We developed a high-throughput bioreporter platform that enables genome-wide screening of biofilm-associated gene expression across nearly 2,000 transposon mutants. Using this approach, we show that key biofilm processes, adhesion and extracellular DNA release, are controlled by largely distinct regulatory networks, and we identify mntR as a previously unrecognized regulator shared by both pathways. Beyond these biological insights, our work provides a versatile and readily adaptable strategy for dissecting complex regulatory systems in S. aureus and other bacterial species.