Functional Organization of the Neonatal Basal Ganglia and Thalamus

Blake, S. L.; Kenley, J. K.; Smyser, T. A.; Latham, A.; Alexopoulos, D.; Greene, D. J.; Lean, R. E.; Barch, D. M.; Warner, B. B.; Luby, J. L.; Rogers, C. E.; Smyser, C. D.; Sylvester, C. M.; Nielsen, A. N.

doi:10.64898/2026.07.02.736181

bioRxiv · 10.64898/2026.07.02.736181

Functional Organization of the Neonatal Basal Ganglia and Thalamus

Blake, S. L.·Kenley, J. K.·Smyser, T. A.·Latham, A.·Alexopoulos, D.·Greene, D. J.·Lean, R. E.·Barch, D. M.·Warner, B. B.·Luby, J. L.·Rogers, C. E.·Smyser, C. D.·Sylvester, C. M.·Nielsen, A. N.

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Abstract

The basal ganglia and thalamus are key nodes in subcortico-cortical loops involved in sensory, motor, and cognitive function. In adults, posterior regions of the subcortex link to cortical sensorimotor networks and anterior regions link to association networks. Alterations in the size, strength, and selectivity of these subcortical regional network representations are implicated in several neuropsychiatric disorders, many of which originate early in development. However, the organization of these network representations at birth remains incompletely understood, limiting our ability to devise normative and atypical developmental models of subcortico-cortical interactions. Using resting-state fMRI, we characterized the size, strength, and selectivity of cortical network representations in the basal ganglia and thalamus in a set of neonates (n=261) and compared results to children (age range 9-11 years, n=69) and adults (n=120). We found that the broad anterior-posterior organization of the subcortex is present at birth, yet representations of somatomotor networks were larger at birth compared to children and adults (p<0.001). The strength and selectivity of subcortico-cortical functional connectivity (FC) exhibited interactions between age group and network (all p<0.001), such that subcortical representations of sensorimotor networks exhibited stronger FC and higher selectivity in neonates, while subcortical representations of association networks exhibited stronger FC and higher selectivity in older cohorts. In parallel, data-driven clustering revealed areas with integration of multiple networks in the neonatal subcortex. These results suggest that subcortico-cortical FC evolves over development largely in a sensorimotor-association manner and provide a baseline for normative and disordered subcortical development. HIGHLIGHTSO_LIThe basic anterior-posterior layout of association to sensorimotor network representation in the basal ganglia and thalamus is present at term birth. C_LIO_LISensorimotor systems are overrepresented in neonates compared to children and adults. C_LIO_LISensorimotor representations exhibit greater functional connectivity strength and selectivity than association representations at birth, while association representations are stronger and more selective than sensorimotor representations in adults. C_LIO_LIThe neonatal subcortex exhibits substantial integration of multiple cortical networks. C_LI GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=150 SRC="FIGDIR/small/736181v1_ufig1.gif" ALT="Figure 1"> View larger version (48K): org.highwire.dtl.DTLVardef@1d3bfa3org.highwire.dtl.DTLVardef@ca904dorg.highwire.dtl.DTLVardef@c7c219org.highwire.dtl.DTLVardef@983020_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Blake, S. L., Kenley, J. K., Smyser, T. A., Latham, A., Alexopoulos, D., Greene, D. J., Lean, R. E., Barch, D. M., Warner, B. B., Luby, J. L., Rogers, C. E., Smyser, C. D., Sylvester, C. M., Nielsen, A. N.. 2026-07-03. Functional Organization of the Neonatal Basal Ganglia and Thalamus. https://doi.org/10.64898/2026.07.02.736181

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