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bioRxiv · 10.64898/2026.06.30.735592

Neurokraken: A fully flexible, open-source, python-based neuroscience behavior platform

Wallerus, A.·Castro e Almeida, S.·Passecker, J.
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Abstract

A major challenge in behavioral neuroscience is the lack of a unified software framework capable of implementing diverse paradigms across species and experimental setups. Researchers currently face a trade-off: they must either spend significant time developing custom, siloed solutions that hinder reproducibility, or incur substantial costs purchasing inflexible, closed systems. Here, we present Neurokraken, an open-source, Python-native platform designed to overcome these limitations. Neurokraken allows writing experiment progression entirely in standard python, while its core architecture automatically sets up a microcontroller for the connected hardware components and enables python side access with millisecond-precision timing and automatic logging. The system prioritizes ease of use and flexibility, enabling advanced series of events and conditions, the usage of python ecosystem code and packages within experiments, and the addition of any arduino-compatible electronic devices for custom experiments. As a result, users can easily create interactive virtual and real environments to engage, monitor, and record subjects. We present Neurokrakens versatility across a wide range of paradigms, for human and non-human primate psychophysics, and complex rodent behavior in both head-fixed and freely moving paradigms. Its modular design allows for rapid hardware reconfiguration, while a fully customizable user interface enables real-time monitoring and interactive experimental control without compromising timing precision. By uniting laboratory-grade precision with an accessible and flexible open-source philosophy, Neurokraken provides a single, powerful solution to design and execute next-generation behavioral experiments. We hope Neurokraken helps accelerate research, improve reproducibility throughout the neuroscience community, and make advanced behavioral experimentation more accessible through its substantial cost-efficiency.

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Wallerus, A., Castro e Almeida, S., Passecker, J.. 2026-07-06. Neurokraken: A fully flexible, open-source, python-based neuroscience behavior platform. https://doi.org/10.64898/2026.06.30.735592

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