The Lipidome of iPSC-Derived Retinal Organoids and RPE Partially Resembles that of the Human Retina

Swinkels, D.; van Oosten, E. M.; Bouckaert, M.; Hoogendoorn, A. D. M.; Kieboom, W.; Bukkems, F.; De Baere, E.; Almedawar, S.; Collin, R. W. J.; Coppieters, F.; Willemsen, M. A. A. P.; Vaz, F. M.; Garanto, A.

doi:10.64898/2026.06.09.730899

bioRxiv · 10.64898/2026.06.09.730899

The Lipidome of iPSC-Derived Retinal Organoids and RPE Partially Resembles that of the Human Retina

Swinkels, D.·van Oosten, E. M.·Bouckaert, M.·Hoogendoorn, A. D. M.·Kieboom, W.·Bukkems, F.·De Baere, E.·Almedawar, S.·Collin, R. W. J.·Coppieters, F.·Willemsen, M. A. A. P.·Vaz, F. M.·Garanto, A.

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Abstract

New approach methodologies (NAMs), including induced pluripotent stem cell (iPSC)-derived retinal organoids (ROs) and retinal pigment epithelium (iRPE), are increasingly applied to study retinal disease mechanisms and therapeutic strategies. However, these models often remain relatively immature. Given the high lipid content and complex metabolism of the retina, it is unclear to what extent iPSC-derived systems recapitulate the human retinal lipidome. Here, we compared the lipidomic profiles of ROs and iRPE, collected at several differentiation stages, with those of post-mortem adult human macular, non-macular and RPE plus choroid (pmRPE). The lipidome of iRPE differed markedly from pmRPE, whereas prolonged differentiation of ROs resulted in a lipidomic profile increasingly resembling that of the post-mortem retina. Moreover, ROs showed similarities to both macular and non-macular lipidome. These findings show that iPSC-derived models can become valuable NAMs to study lipid-related retinal disorders and provide a framework to optimize differentiation protocols.

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Swinkels, D., van Oosten, E. M., Bouckaert, M., Hoogendoorn, A. D. M., Kieboom, W., Bukkems, F., De Baere, E., Almedawar, S., Collin, R. W. J., Coppieters, F., Willemsen, M. A. A. P., Vaz, F. M., Garanto, A.. 2026-06-10. The Lipidome of iPSC-Derived Retinal Organoids and RPE Partially Resembles that of the Human Retina. https://doi.org/10.64898/2026.06.09.730899

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