Spatial and Molecular Progression of Neural Progenitor Cells in the Developing Human Dentate Gyrus

Paredes, M. F.; Pastor-Alonso, O.; Heffel, M.; Baig, M. S.; Harris, J.; Granero, S. G.; Li, S.; Beccari, S.; Chu, J.; Lambing, H.; Lu, I.-L.; Varughese, M.; Cheng, A. L.; Le, J.; Bhade, M.; Kim, J.; Cebrian-Silla, A.; Cuevas, I. T.; Auguste, K. I.; Huang, E.; Alvarez-Buylla, A.; Gomez, J.; Garcia Verdugo, J. M.; Luo, C.

doi:10.64898/2026.06.06.730648

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bioRxiv · 10.64898/2026.06.06.730648

Spatial and Molecular Progression of Neural Progenitor Cells in the Developing Human Dentate Gyrus

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Abstract

The large diversity of neuronal and glial cell types in the human brain is underpinned by foundational cell populations known as neural progenitor cells (NPCs). The dentate gyrus (DG) of the hippocampus, a key structure in learning and memory, maintains a tightly organized NPC population into adulthood across many mammalian species. However, the emergence, organization and persistence of NPCs in the human hippocampus remain poorly characterized. Reports of NPCs in the juvenile, adult, and aged periods have been variable, reflecting differences in identification criteria and highlighting the need for a unified framework across development. In this study, we provide a spatial and molecular map of the developmental trajectory of NPCs in the human DG, combining multimodal transcriptomic analysis within a neuroanatomical context. At mid-gestation, we observed changes in the structural and cellular arrangement of the hippocampus, coinciding with the emergence of a multicellular NPC layer within the DG, herein named the granular-hilar progenitor zone (GHPZ). Neurogenic transcriptomic signatures in the GHPZ were diminished by early infancy, coinciding with a reduction in NPC number as they progressed toward an astrocytic program. At childhood, the GHPZ dissolved with only sparse radial NPCs remaining in the DG. Lastly, we validated WNT signaling pathway-associated genes as NPC identity markers in the developing human DG, observing a decline in their expression after infancy. Our study defines the steep decline of NPCs from gestation to the postnatal period, identifies their progression to an astrocytic nature, and sets the molecular blueprint for NPC identification in the human DG. HighlightsO_LIMultimodal mapping of neural progenitor cells from gestational to postnatal stages in the human hippocampus C_LIO_LIFormation of the granular-hilar progenitor zone within the dentate gyrus at mid-gestation C_LIO_LINeurogenic potential declines sharply from the prenatal period to childhood, with radial glia cells progressively acquiring astrocytic features C_LIO_LIDevelopmental modulation of the WNT signaling pathway accompanies radial glia cell transitions C_LI

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Paredes, M. F., Pastor-Alonso, O., Heffel, M., Baig, M. S., Harris, J., Granero, S. G., Li, S., Beccari, S., Chu, J., Lambing, H., Lu, I.-L., Varughese, M., Cheng, A. L., Le, J., Bhade, M., Kim, J., Cebrian-Silla, A., Cuevas, I. T., Auguste, K. I., Huang, E., Alvarez-Buylla, A., Gomez, J., Garcia Verdugo, J. M., Luo, C.. 2026-06-08. Spatial and Molecular Progression of Neural Progenitor Cells in the Developing Human Dentate Gyrus. https://doi.org/10.64898/2026.06.06.730648

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