Cholangiocyte RUNX1 Orchestrates Fibrogenic and Inflammatory Signaling to Drive Biliary Fibrosis

Aseem, S. O.; Wang, J.; Younis, A.; Nakib, D.; Way, G.; Carter, C.; Zhao, D.; Tai, Y.-L.; Wang, X.; Gurley, E.; MacParland, S.; Hylemon, P. B.; Jalan-Sakrikar, N.; Huebert, R. C.; Karpen, S. J.; Sanyal, A. J.; Zhou, H.

doi:10.64898/2026.05.20.726667

bioRxiv · 10.64898/2026.05.20.726667

Cholangiocyte RUNX1 Orchestrates Fibrogenic and Inflammatory Signaling to Drive Biliary Fibrosis

Aseem, S. O.·Wang, J.·Younis, A.·Nakib, D.·Way, G.·Carter, C.·Zhao, D.·Tai, Y.-L.·Wang, X.·Gurley, E.·MacParland, S.·Hylemon, P. B.·Jalan-Sakrikar, N.·Huebert, R. C.·Karpen, S. J.·Sanyal, A. J.·Zhou, H.

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Abstract

IntroductionBiliary fibrosis and inflammation are central to the pathogenesis of cholangiopathies such as primary sclerosing cholangitis (PSC) and primary biliary cholangitis (PBC). Inflammatory and fibrogenic stimuli, such as transforming growth factor-{beta} (TGF{beta}) and lipopolysaccharide (LPS) signaling, drive these processes, but their underlying transcriptional mechanisms in cholangiocytes remain incompletely defined. We investigated the role of Runt-related transcription factor 1 (RUNX1) as a transcriptional co-regulator of fibroinflammatory signaling in cholangiocytes. MethodsHuman PSC-derived cholangiocytes (PSC-Cs) and mouse large biliary epithelial cells (MLEs) were subjected to RUNX1 knockdown or pharmacologic inhibition (Ro5-3335 or AI-10-104). Cytokine secretion was profiled by Luminex multiplexing; RUNX1 genomic binding and protein interactome were assessed by ChIP-qPCR, ChIP-seq, and LC-MS/MS. In vivo, Mdr2-/- mice received Ro5-3335, and cholangiocyte-selective Runx1 knockout mice (Krt19-CreERT) were challenged with a DDC diet, followed by evaluation of fibrosis and inflammation. ResultsRUNX1 expression was significantly increased in cholangiocytes from PSC and PBC patients, and Mdr2-/- mice. RUNX1 knockdown or inhibition reduced IL6, TNF, and other proinflammatory cytokines in PSC-Cs and attenuated TGF{beta}-, LPS-, and TNF-induced Il6 and Ccl2 expression in MLEs. ChIP-qPCR and ChIP-seq revealed TGF{beta}-induced RUNX1 binding to the Il6 promoter and 727 additional genomic sites enriched for fibrosis and inflammatory pathways; predicted upstream regulators included TGF{beta}, TNF, and NF{kappa}B signaling. Proteomic analysis identified TGF{beta}-induced RUNX1 interactions with SMAD2 and NF{kappa}B2. In vivo, Ro5-3335 treatment in Mdr2-/- mice reduced hepatic collagen, ECM gene expression, immune cell infiltration, and serum liver injury markers and bile acids. Similarly, cholangiocyte-specific Runx1 deletion mitigated fibrosis, inflammation, and liver injury in DDC-fed mice. ConclusionRUNX1 is a central transcriptional hub integrating TGF{beta} and inflammatory signals in cholangiocytes. Its inhibition attenuates biliary fibrosis and inflammation in cholestatic models, supporting RUNX1 as a potential therapeutic target in fibroinflammatory cholangiopathies.

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Aseem, S. O., Wang, J., Younis, A., Nakib, D., Way, G., Carter, C., Zhao, D., Tai, Y.-L., Wang, X., Gurley, E., MacParland, S., Hylemon, P. B., Jalan-Sakrikar, N., Huebert, R. C., Karpen, S. J., Sanyal, A. J., Zhou, H.. 2026-05-22. Cholangiocyte RUNX1 Orchestrates Fibrogenic and Inflammatory Signaling to Drive Biliary Fibrosis. https://doi.org/10.64898/2026.05.20.726667

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