Preoperative biliary stenting is associated with functional dysbiosis and impaired bile acid metabolism in pancreatic cancer - Impact of preoperative biliary stenting on gut microbiota

Cathomas, M.; Zamir, E.; Keller, M.; Gobin, T.; Joetten, L.; Gauer, E.; Heckler, M.; Kong, B.; Gaiser, R. A.; Harnoss, J. M.; Schmidt, S.; Loos, M.; Elinav, E.; Bork, P.; Michalski, C. W.; Hank, T.

doi:10.64898/2026.05.19.719953

bioRxiv · 10.64898/2026.05.19.719953

Preoperative biliary stenting is associated with functional dysbiosis and impaired bile acid metabolism in pancreatic cancer - Impact of preoperative biliary stenting on gut microbiota

Cathomas, M.·Zamir, E.·Keller, M.·Gobin, T.·Joetten, L.·Gauer, E.·Heckler, M.·Kong, B.·Gaiser, R. A.·Harnoss, J. M.·Schmidt, S.·Loos, M.·Elinav, E.·Bork, P.·Michalski, C. W.·Hank, T.

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Abstract

Recent evidence suggests that the gut microbiome plays a role in the development and treatment response of pancreatic ductal adenocarcinoma (PDAC). However, the functional impact of tumor location and preoperative biliary stenting (PBS) on microbial composition and metabolism remains poorly understood. In this prospective study, preoperative stool specimens were collected from patients undergoing surgery for PDAC at Heidelberg University Hospital, Germany, between March 2020 and July 2021. Whole-genome shotgun metagenomic sequencing was performed to characterize microbial composition and functional pathways. A total of 63 preoperative stool samples were analyzed, including 40 patients with pancreatic head tumors (63.5%) and 23 with body/tail tumors (36.5%). Microbial community composition differed significantly according to tumor location (Bray-Curtis, p=0.005), with enrichment of Ruminococcus bromii in body/tail tumors. Among patients with pancreatic head tumors, PBS was associated with reduced alpha diversity (Shannon index, p=0.04), depletion of taxa including members of the Eubacteriales and Clostridiales orders as well as the genera Raoultella and Prevotella, and reduced abundance of selected genes involved in secondary bile acid metabolism. PBS was also associated with a higher rate of major postoperative complications according to Clavien-Dindo >3a (28.6% vs 3.8%; p=0.04). These findings suggest that biliary intervention may induce functional dysbiosis characterized by reduced microbial diversity and impaired bile acid metabolism, potentially disrupting host- microbiome crosstalk and contributing to adverse postoperative outcomes in pancreatic cancer.

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Cathomas, M., Zamir, E., Keller, M., Gobin, T., Joetten, L., Gauer, E., Heckler, M., Kong, B., Gaiser, R. A., Harnoss, J. M., Schmidt, S., Loos, M., Elinav, E., Bork, P., Michalski, C. W., Hank, T.. 2026-05-21. Preoperative biliary stenting is associated with functional dysbiosis and impaired bile acid metabolism in pancreatic cancer - Impact of preoperative biliary stenting on gut microbiota. https://doi.org/10.64898/2026.05.19.719953

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