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bioRxiv · 10.64898/2026.04.08.717321

Comparative Unfolding of the Trp-cage Miniprotein in Anionic and Cationic Surfactants

Nnyigide, O. S.·Byeon, H.·Okpete, U. E.
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Abstract

The conformational dynamics of a model cationic protein in water and in the presence of anionic sodium dodecyl sulphate (SDS) and cationic cetyltrimethylamonium bromide (CTAB) surfactants at different concentrations were investigated using all-atom molecular dynamics simulations. Free-energy landscapes constructed along principal components reveal a compact, well-defined native basin at 25 {degrees}C in water, whereas elevated temperature (100 {degrees}C) induces a broadening of the conformational space and the emergence of multiple metastable states. The presence of surfactants further modulates this behavior in a concentration-dependent manner. Cluster population analysis shows that SDS promotes a highly heterogeneous ensemble characterized by reduced dominance of the native-like cluster, while CTAB partially protects the protein from thermal denaturation at higher concentrations. Radial distribution functions demonstrate strong accumulation of SDS headgroups around the protein and pronounced insertion of SDS alkyl tails into hydrophobic protein regions, indicating direct hydrophobic destabilization and micelle-assisted unfolding. In contrast, CTAB exhibits weaker headgroup association owing to electrostatic repulsion and reduced tail-hydrophobic contacts, suggesting a less disruptive interaction mechanism. At high concentration, CTAB aggregates provide a structured hydrophobic environment that stabilizes the folded state and suppresses denaturation. Together, these results provide a molecular-level picture of how surfactant chemistry and concentration govern the conformational stability of a cationic protein, highlighting the dominant role of hydrophobic interactions in surfactant-induced denaturation at high temperature. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=89 SRC="FIGDIR/small/717321v1_ufig1.gif" ALT="Figure 1"> View larger version (24K): org.highwire.dtl.DTLVardef@dcf96aorg.highwire.dtl.DTLVardef@17acdc7org.highwire.dtl.DTLVardef@15bdc2borg.highwire.dtl.DTLVardef@1d39f3c_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Nnyigide, O. S., Byeon, H., Okpete, U. E.. 2026-04-09. Comparative Unfolding of the Trp-cage Miniprotein in Anionic and Cationic Surfactants. https://doi.org/10.64898/2026.04.08.717321

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