Mechanical confinement drives monocyte-to-macrophage differentiation

Liu, W.; Chen, X.-Z.; Zhang, H.; Bai, X.; Du, Y.-T.; Ji, Y.-X.; Mao, R.-Y.; Wang, Y.-J.; Sheng, M.; Gao, H.; Jing, G.; CHEN, F. X.; Huang, X.; Chen, Z.; Liu, Y.-J.

doi:10.64898/2026.03.31.715742

bioRxiv · 10.64898/2026.03.31.715742

Mechanical confinement drives monocyte-to-macrophage differentiation

Liu, W.·Chen, X.-Z.·Zhang, H.·Bai, X.·Du, Y.-T.·Ji, Y.-X.·Mao, R.-Y.·Wang, Y.-J.·Sheng, M.·Gao, H.·Jing, G.·CHEN, F. X.·Huang, X.·Chen, Z.·Liu, Y.-J.

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Abstract

Cells in vivo experience mechanically diverse microenvironments in which physical confinement is a pervasive but poorly understood regulator of their behavior and fate. Whether and how mechanical confinement governs immune cell differentiation remains unknown. Here, we reveal that a mechanical cue -- long-term confinement is sufficient to drive monocyte-to-macrophage differentiation through a mechanoepigenetic pathway. In vivo, differentiating monocytes exhibited flattened nuclei in the liver capsule, indicative of confinement by surrounding stromal and parenchymal structures. Using a custom cell confiner to recapitulate this confined niche, we found that confinement induces macrophage-like protrusive architectures, enhances motility, and upregulates macrophage-associated genes in RAW264.7 and THP-1 monocyte-lineage cells. Notably, extending this paradigm to primary murine bone-marrow, human umbilical-cord, and tissue-derived hepatic-associated monocytes yielded similar outcomes, thus enhancing phagocytic capacity, directly demonstrating that mechanical confinement can program monocytes into macrophages. Mechanistically, we found that confinement activates KDM6B, leading to H3K27me3 demethylation, which derepresses macrophage-specific transcriptional programs. Pharmacological inhibition of KDM6B with GSK-J4 restored H3K27me3 and blocked macrophage differentiation both in vitro and in vivo. These findings define a KDM6B-H3K27me3 axis that links nuclear mechanics to transcriptional reprogramming, positioning mechanical confinement as a "super-enhancer-like" cue for engineer macrophage function in therapeutic and bioengineering contexts.

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Liu, W., Chen, X.-Z., Zhang, H., Bai, X., Du, Y.-T., Ji, Y.-X., Mao, R.-Y., Wang, Y.-J., Sheng, M., Gao, H., Jing, G., CHEN, F. X., Huang, X., Chen, Z., Liu, Y.-J.. 2026-04-01. Mechanical confinement drives monocyte-to-macrophage differentiation. https://doi.org/10.64898/2026.03.31.715742

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