Developmental determinants of male bias in medulloblastoma

Bianchini, L.; Xu, R.; Filipovic, D.; Benites Goncalves da Silva, P.; Sieber, L.; Akcay, V.; Arnskoetter, F.; Joshi, P.; Nolle, J.; Soliman, T.; Tao, R.; Scheuing, A.; Okonechnikov, K.; Atamian, A.; Zuckermann, M.; Robinson, G. W.; Quadrato, G.; Northcott, P. A.; Kutscher, L. M.

doi:10.64898/2026.03.25.714163

bioRxiv · 10.64898/2026.03.25.714163

Developmental determinants of male bias in medulloblastoma

Bianchini, L.·Xu, R.·Filipovic, D.·Benites Goncalves da Silva, P.·Sieber, L.·Akcay, V.·Arnskoetter, F.·Joshi, P.·Nolle, J.·Soliman, T.·Tao, R.·Scheuing, A.·Okonechnikov, K.·Atamian, A.·Zuckermann, M.·Robinson, G. W.·Quadrato, G.·Northcott, P. A.·Kutscher, L. M.

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Abstract

Boys experience an overall increased incidence of several childhood cancers, including medulloblastoma, a clinically heterogeneous cerebellar tumor. In subtypes of Group 3 and Group 4 medulloblastoma, males are three times more prevalent than females. As medulloblastoma is suspected to initiate during fetal development, we hypothesized that this sex bias reflects a combination of prenatal, sex-specific developmental processes and somatic alterations. To test these hypotheses, we compiled a large multi-omics dataset from children with medulloblastoma, which revealed sex-specific alterations, including frequent loss of the inactive X chromosome in females with Group 4. Generation of a sex-matched single-cell transcriptome atlas of the developing murine cerebellum enabled investigation of putative developmental factors underlying sex bias. Progenitors giving rise to Group 3/4 subgroups were more abundant, more proliferative, and harbored more open chromatin for recruitment of LMX1A and OTX2, master transcription factors defining Group 3/4 identity. Advanced genetically engineered mouse models and human cerebellar organoids were leveraged to determine whether sexual dimorphism arises from intrinsic or extrinsic factors. These models showed that the XY genotype contributed to the phenotype, but the predominant effect was driven by presence of the male gonadal hormone testosterone. Our findings provide a sex-specific genetic and neurodevelopmental explanation for male bias in an aggressive pediatric brain tumor. Outcomes from this study may inform novel treatment strategies delivered according to sex and are likely to be broadly applicable to other sex-biased malignancies arising in early life. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=79 SRC="FIGDIR/small/714163v1_ufig1.gif" ALT="Figure 1"> View larger version (18K): org.highwire.dtl.DTLVardef@566e41org.highwire.dtl.DTLVardef@607ae9org.highwire.dtl.DTLVardef@25679aorg.highwire.dtl.DTLVardef@1b4beec_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Bianchini, L., Xu, R., Filipovic, D., Benites Goncalves da Silva, P., Sieber, L., Akcay, V., Arnskoetter, F., Joshi, P., Nolle, J., Soliman, T., Tao, R., Scheuing, A., Okonechnikov, K., Atamian, A., Zuckermann, M., Robinson, G. W., Quadrato, G., Northcott, P. A., Kutscher, L. M.. 2026-03-25. Developmental determinants of male bias in medulloblastoma. https://doi.org/10.64898/2026.03.25.714163

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