HIRA-mediated H3.3 deposition preserves hepatocyte cell identity during liver aging

Arnold, R.; Garcia Teneche, M.; Lei, X.; Gandhi, A.; Huan Shi, C.; Proulx, J.; Rajesh, A.; Havas, A. P.; Su, S.; Sethiya, A.; Yin, S.; Tanaka, H.; Chua, Z.-M.; Davis, A.; Haddadin, L.; Alcaraz, M.; Huang, I.; Liou, A.; Equey, A.; Dasgupta, N.; Miller, K. N.; Tulessin, M.; Charbono, B.; Charbono, A.; Varanasi, S. K.; Porritt, R. A.; Garcia, G.; Chauhan, S.; Egan, B.; Choob, M.; Mogler, C.; Yip, K. Y.; Ozato, K.; Kaech, S. M.; Wang, Y. X.; Adams, P. D.

doi:10.64898/2026.03.09.710643

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bioRxiv · 10.64898/2026.03.09.710643

HIRA-mediated H3.3 deposition preserves hepatocyte cell identity during liver aging

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Abstract

Age-associated functional decline is partly driven by progressive chromatin degeneration. Maintenance of chromatin integrity preserves cell identity and promotes healthy aging, but through different mechanisms in proliferating and non-proliferating cells. However, specific mechanisms of chromatin maintenance and their compensatory capacity in proliferating and non-proliferating cells are undefined. The histone chaperone HIRA deposits the histone variant H3.3 in a DNA replication-independent manner, leading to its accumulation in aging, non-proliferating cells. Here, we show that hepatocyte-specific loss of HIRA causes loss of cell identity, metabolic dysfunction, and accelerated fibrotic pathology with age. Transcriptomic and epigenomic analyses indicate that HIRA-H3.3 preserves chromatin integrity and sustains transcription of highly expressed genes, including cell identity genes. Partial hepatectomy, associated with induced proliferation, restores identity of HIRA knockout livers with compensatory deposition of canonical histones H3.1/2. Together, these results demonstrate that HIRA-mediated H3.3 deposition is essential for safeguarding cell identity and tissue function during aging of non-proliferating cells, but this function can be rescued by tissue regeneration and associated cell proliferation. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=124 SRC="FIGDIR/small/710643v1_ufig1.gif" ALT="Figure 1"> View larger version (29K): org.highwire.dtl.DTLVardef@a2a26aorg.highwire.dtl.DTLVardef@154e5aeorg.highwire.dtl.DTLVardef@b315a7org.highwire.dtl.DTLVardef@152bca4_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Arnold, R., Garcia Teneche, M., Lei, X., Gandhi, A., Huan Shi, C., Proulx, J., Rajesh, A., Havas, A. P., Su, S., Sethiya, A., Yin, S., Tanaka, H., Chua, Z.-M., Davis, A., Haddadin, L., Alcaraz, M., Huang, I., Liou, A., Equey, A., Dasgupta, N., Miller, K. N., Tulessin, M., Charbono, B., Charbono, A., Varanasi, S. K., Porritt, R. A., Garcia, G., Chauhan, S., Egan, B., Choob, M., Mogler, C., Yip, K. Y., Ozato, K., Kaech, S. M., Wang, Y. X., Adams, P. D.. 2026-03-11. HIRA-mediated H3.3 deposition preserves hepatocyte cell identity during liver aging. https://doi.org/10.64898/2026.03.09.710643

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