Diversification of biofilm architecture among freshwater Pararheinheimera isolates

Abstract

Air-liquid interfaces (ALIs) at the upper layer of oceans, lakes and rivers cover the majority of the earths surface. Microbes are known to accumulate at these resource-rich boundaries, but the mechanisms of ALI colonization are often assumed to mirror the formation of pellicle biofilms by non-aquatic organisms. Here, we analyzed ALI colonization by natural aquatic bacteria. We used samples from a freshwater lake to enrich for microbes that colonize the ALI in liquid growth medium. Mixed-species pellicles formed rapidly in these enrichments, were structurally stable for weeks and displayed a pronounced ecological succession. We isolated 31 members of the genus Pararheinheimera from early stages of mixed-species pellicle maturation. Five phylogenetically distinct Pararheinheimera clades were identified, each with a shared colony morphology. We used representative isolates to show that only one Pararheinheimera clade formed thin, adherent films at the ALI resembling classical pellicles. Isolates from the four remaining clades formed floating structures that could be categorized either as non-adhesive films or large viscous masses. Viscous mass (VM) pellicle formation was a polyphyletic trait that correlated with a highly mucoid appearance on agar plates, suggesting that the process is driven by copious secretion of extracellular matrix. Matrices from VM biofilms were largely non-adhesive, contained a mixture of acidic polysaccharides and proteins and formed thermally stable, shear-thinning hydrogels. Our results demonstrate that ALI colonization strategies vary widely even among closely related aquatic bacteria and identify VM pellicles as a distinct biofilm architecture with unique mechanical properties. ImportanceLakes, rivers and oceans contain a boundary between the air and the waters surface known as the air-liquid interface (ALI). Microbial communities that populate the ALI play crucial roles in nutrient cycling, but how aquatic microbes partition to these sites remains poorly characterized. Our study investigated how bacteria from a freshwater lake accumulate at the ALI. Lake water samples incubated in nutrient medium formed a layer of cells known as a pellicle biofilm at the ALI, and we isolated 31 different bacteria from a genus (Pararheinheimera) that was abundant during the early stages of pellicle formation. Only a subset of Pararheinheimera isolates formed traditional pellicle biofilms. Most formed either thin, non-adhesive films or large, gelatinous aggregates that appeared to persist at the ALI due to buoyancy. These findings expand our understanding of biofilm diversity in aquatic systems and suggest that the production of buoyant hydrogels may play an important role in structuring microbial communities at air-water boundaries.