bioRxiv Science⌕ Search

bioRxiv · 10.64898/2026.01.15.699706

Prenatal Exposure to Bacterial Extracellular Vesicles Influences Fetal Gut Immunity and Immune Programming

Abstract

BackgroundThe fetal immune system undergoes pivotal development during gestation, preparing for postnatal antigenic challenges. Bacterial extracellular vesicles (bEVs), bioactive particles shed by bacteria, are emerging as modulators of host immunity. However, their role in shaping fetal intestinal immune development remains largely unexplored. ObjectivesThis study aimed to investigate the effects of bEV exposure on lymphoid and myeloid populations in the fetal murine gut, focusing on their role in priming intestinal immunity, promoting differentiation, and modulating immune cell phenotypes in both normal and germ-free (GF) environments. Materials and MethodsWe used a murine model to evaluate the immune-modulating effects of bEVs during fetal development. bEVs were isolated from bacterial cultures and introduced into the amniotic sac of embryonic day 15.5 (E15.5) fetuses through intra-amniotic injection. Fetal and neonatal mice were either raised under conventional conditions (normal environment, NE) or in germ-free (GF) environments to assess microbiota-dependent effects. Immune profiling of fetal (E17) and postnatal (4 weeks) gut tissues was performed using high-dimensional mass cytometry (CyTOF) in both conventionally housed and germ-free (GF) mice. Clustering and differential expression analyses identified lymphoid and myeloid subpopulations, including progenitors, antigen-presenting cells, and intestinal stem cells (ISCs). secondary immune challenge (LPS or TSST-1) was conducted in postnatal bEV-primed mice to assess immune memory responses. ResultsbEV exposure significantly increased the prevalence of CD45- CD24+ CD44+ ISCs, promoting intestinal renewal and defense via differentiation into Paneth and tuft cells. These ISCs exhibited potential antigen-presenting capabilities through MHC expression. CD45+ lymphoid progenitors were upregulated, highlighting their role in early differentiation pathways. Myeloid progenitors, particularly monocyte-dendritic progenitor subsets, showed a bias toward antigen-presenting phenotypes.Germ-free models revealed heightened sensitivity to bEVs, with pronounced activation of progenitors and a reduction in exhaustion markers. Interestingly, macrophage and neutrophil populations displayed dose-dependent modulation, with low bEV concentrations promoting their expansion and higher doses leading to reduced incidence. Our findings suggest that bEVs act as immune priming agents in the fetal gut, promoting progenitor expansion and differentiation while preparing the intestine for postnatal challenges. Differences in responses between NE and GF models emphasize the importance of environmental influences, including microbiota, on bEV-mediated immune modulation. ConclusionbEVs play a pivotal role in shaping fetal intestinal immunity by priming lymphoid and myeloid progenitors and enhancing ISC function. These results open potential avenues for leveraging bEVs in immunomodulation and vaccine strategies. Future studies should explore the functional responses of bEV-primed cells and their translational relevance in humans.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Vidal, M. S., Kammala, A. K., Tatiparthy, M., Lintao, R. C. V., Cherukuri, R., Tantengco, O. A., Buffington, S. A., Radnaa, E., Richardson, L., Menon, R.. 2026-01-15. Prenatal Exposure to Bacterial Extracellular Vesicles Influences Fetal Gut Immunity and Immune Programming. https://doi.org/10.64898/2026.01.15.699706

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Transposable Elements Profiling Reveals DUXA-associated MLT1D Endogenous Retroviral Elements Activation During Bovine Maternal to Zygotic Transition

Transposable elements (TEs) are a major source of genomic diversity in mammals, yet their regulatory roles in the bovine genome remain poorly understood. Through characterizing bovine TE landscape, despite the substantial proportion (25.6%) of ruminant-specific TEs, we observe age- and class-dependent genomic distribution patterns similar to those observed in other mammals. Next, we profile TE and gene expression dynamics in pre-implantation embryos generated in vivo (IVV), by in vitro fertilization (IVT), and through somatic cell nuclear transfer (SCNT). The zygotic genome activation (ZGA) is shifted from the 4-cell stage to the 8-cell stage in IVT and SCNT embryos compared to IVV embryos. SCNT embryos exhibit impaired initiation of early transcription programs at the 4-cell stage and disrupted developmental trajectories, including abnormal activation of pluripotency-associated genes. A subset of retroviral LTR elements are strongly activated at ZGA in IVV and IVT embryos, whereas their activation is markedly muted in SCNT embryos, suggesting that impaired gene and TE reprogramming may contribute to the developmental defects commonly observed in SCNT embryos. By epigenomic profiling, the MLT1D elements from the ERVL-MaLR LTR family lose repressive marks and gain H3K27ac at ZGA, together with DUXA-binding motif enrichment. Knockdown of DUXA in bovine embryos significantly reduced MLT1D expression and ZGA marker genes. We propose that a subset of DUXA-enriched MLT1D functions as enhancers that promote ZGA. Overall, our study provides new insights into the regulatory roles of TEs during bovine embryogenesis and establishes a framework for comparative studies of TE-mediated gene regulation in early mammalian development.

developmental biology↗

Distinct transcriptional responses to mild cold versus warm temperatures in adult Drosophila melanogaster ovaries

Temperature influences fertility across diverse organisms, yet the mechanisms underlying how suboptimal temperatures affect gamete production and quality remain largely unknown. We previously showed that chronic exposure of adult Drosophila melanogaster females to mild cold promotes the maintenance of germline stem cells (GSCs) and high oocyte quality over time despite reducing the rates of oogenesis, while exposure to warm temperature causes death of early germline cysts and vitellogenic follicles and a severe decrease in oocyte quality. To explore potential mechanisms underlying these highly distinct responses, we compared the ovarian transcriptomes of females maintained at these temperatures (18{degrees}C or 29{degrees}C) to that of 25{degrees}C controls. We found that 18{degrees}C upregulates or downregulates ~2.5 times as many genes as 29{degrees}C, indicating that the ovary mounts active physiological responses to mild cold and warm temperatures--as opposed to simply undergoing passive changes driven by thermodynamics. Gene set enrichment analysis revealed modulation of genes involved in neuronal signaling in opposite directions at 18{degrees}C versus 29{degrees}C. Most genes, however, exhibit temperature-specific regulation: 29{degrees}C upregulates synaptic transmission genes and downregulates lipid biosynthesis genes, whereas 18{degrees}C upregulates actin cytoskeleton genes and downregulates cell adhesion and lipid organization genes. Notably, mild cold or warm temperature specifically modulated (either up or down) the expression of distinct sets of transposable elements (TEs), suggesting the existence of temperature-dependent TE regulatory mechanisms and/or downstream effects. Finally, we show that GSCs at 18{degrees}C have increased retrotransposon R2 transcript levels, larger nucleolar size, and elevated levels of the known stemness factor phosphorylated Mad, leading to a working model whereby elevated ribosome biogenesis supports increased stemness signaling to promote GSC maintenance in mild cold. These findings suggest potential mechanisms and open new questions for investigation towards a deeper understanding of how temperature modulates gene expression and impacts germline development and quality--which are essential for the perpetuation of species.

developmental biology↗

Dynamic Changes in Endometrial Folding and Secretory Activity Across the Menstrual Cycle

Embryo implantation remains a major limitation of assisted reproductive technology, with failure occurring in approximately 30% of euploid embryo transfers. Implantation requires a synchronized dialogue between the blastocyst and receptive endometrium during the window of implantation (WOI), yet minimally invasive approaches to characterize the structural and molecular features of receptivity remain limited. We analyzed paired sonohysterogram images and uterine lavage samples collected during the proliferative and mid-secretory phases from subjects with regular ovulatory cycles and proven fertility. Endometrial folds were quantified, and lavage samples were analyzed by Luminex multiplex immunoassay. Folds were present in both phases but were significantly more abundant during the mid-secretory WOI, independent of imaging view and endometrial thickness. Folding correlated strongly with circulating estradiol level during the proliferative phase but not the mid-secretory phase, and folding patterns between phases were not correlated, suggesting distinct regulatory mechanisms. Consistent with these structural patterns, uterine lavage demonstrated phase-specific differences in expression of factors associated with endometrial receptivity and implantation, with glandular epithelium, and myeloid-lineage cells emerging as major contributors. Together, these findings identify coordinated structural and secretory processes during the WOI and support further evaluation of endometrial folding and uterine lavage as complementary, minimally invasive markers of endometrial receptivity.

developmental biology↗