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bioRxiv · 10.64898/2026.01.12.698811

microntology: a lightweight, data-driven controlled vocabulary to describe Earth's microbial habitats

Fullam, A.·Prasoodanan P K, V.·Kuhn, M.·Bork, P.·Schmidt, T. S.
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Abstract

SummaryWe introduce microntology v1.0, a pragmatic controlled vocabulary of 148 terms to describe microbial habitats and lifestyles, and provide manually curated microntology annotations for >300k metagenomic samples from public repositories. Data Availabilitymicrontology controlled vocabulary terms and term hierarchies 1, and curated annotations for 305,626 metagenomic samples 2 are available via Zenodo and as supplemental tables S1 and S2. User feedback, suggestions and bug reports are welcome under https://github.com/grp-schmidt/microntology/issues.

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Fullam, A., Prasoodanan P K, V., Kuhn, M., Bork, P., Schmidt, T. S.. 2026-01-12. microntology: a lightweight, data-driven controlled vocabulary to describe Earth's microbial habitats. https://doi.org/10.64898/2026.01.12.698811

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