From Nicotiana to apple: effector screening reveals new avenues for durable scab resistance

de la Rosa, S.; Tarallo, M.; Tannous, J.; Sannier, M.; Tu, Y.-H.; Baudin, M.; Bowen, J. K.; Mosen, A. M.; Plummer, K. M.; Bradshaw, R. E.; Le Cam, B.; Mesarich, C. H.

doi:10.64898/2025.12.25.696553

bioRxiv · 10.64898/2025.12.25.696553

From Nicotiana to apple: effector screening reveals new avenues for durable scab resistance

de la Rosa, S.·Tarallo, M.·Tannous, J.·Sannier, M.·Tu, Y.-H.·Baudin, M.·Bowen, J. K.·Mosen, A. M.·Plummer, K. M.·Bradshaw, R. E.·Le Cam, B.·Mesarich, C. H.

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Abstract

Scab or black spot disease, caused by the fungus Venturia inaequalis, is an ongoing threat to commercial apple production. Current control methods involve extensive fungicide use and the deployment of disease-resistant apple cultivars. However, fungicide-resistant strains of V. inaequalis are becoming more prevalent, as are strains that can overcome one or more qualitative disease resistance genes in apple. To increase the durability of disease resistance, and thus decrease our reliance on fungicides, one promising approach could involve stacking endogenous and exogenous resistance genes in apple cultivars using genetic modification. As a starting point for the identification of exogenous resistance genes that are effective against V. inaequalis, 137 candidate effector (CE) proteins from this fungus, fused to a signal peptide for extracellular targeting to the apoplast, were screened for recognition by extracellular leucine-rich repeat (LRR)-receptor-like protein and LRR-receptor-like kinase immune receptors in the model angiosperm species Nicotiana benthamiana and Nicotiana tabacum using Agrobacterium tumefaciens-mediated transient transformation assays. Here, a cell death response in wild-type plants, together with a loss of this response in plants lacking the extracellular immune co-receptor NbSOBIR1 or NbBAK1, was used as an indicator of recognition. In total, six CE proteins triggered cell death in one or both Nicotiana species, but only one, a homolog of the VmE02 effector protein from the apple pathogen Valsa mali, did so in an NbSOBIR1- and NbBAK1-dependent manner. The five remaining CE proteins are homologs of other known cell death elicitors from filamentous plant pathogens for which there is evidence that they trigger non-canonical extracellular immunity in plants. One of these is an Alt a 1-like protein that also triggered cell death in apple. Collectively, these findings provide a foundation for the use of a combined set of exogenous and endogenous resistance genes in apple to provide durable protection against scab disease.

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de la Rosa, S., Tarallo, M., Tannous, J., Sannier, M., Tu, Y.-H., Baudin, M., Bowen, J. K., Mosen, A. M., Plummer, K. M., Bradshaw, R. E., Le Cam, B., Mesarich, C. H.. 2025-12-26. From Nicotiana to apple: effector screening reveals new avenues for durable scab resistance. https://doi.org/10.64898/2025.12.25.696553

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