Microbiome-behavior coupling shapes infant adaptation to early maternal unpredictability

Amso, D.; Bottino, G. F.; Forest, T. A.; Bonham, K. S.; Zieff, M.; Patel, F.; Miles, M.; Herr, D.; Espinoza-Heredia, C.; D'Amato, C.; Ren, J.; Goldstone, M.; Mbale, E.; Alexander, D. C.; Jones, D. K.; Williams, S. C.; Fifer, W. P.; Gabard-Durnam, L.; Klepac-Ceraj, V.; Donald, K. A.

doi:10.64898/2025.12.03.692149

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bioRxiv · 10.64898/2025.12.03.692149

Microbiome-behavior coupling shapes infant adaptation to early maternal unpredictability

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Abstract

We asked whether infant microbiome composition, together with infants behavioral responses to early maternal unpredictability, can offer novel mechanistic insights into behavioral phenotypic variation in human development. Maternal unpredictability was computed as the entropy rate of transitions among maternal sensory signals during naturalistic mother-infant interaction (n=256 dyads; 2-6 months). Infant visual orienting behavior (VOB) was indexed by infants simultaneous gaze shifts to and from the mother. Higher maternal unpredictability predicted more frequent VOB shifts, indicating a mature-for-age profile, and longitudinally forecast poorer inhibitory control at 19-28 months. A subgroup of infants with high maternal unpredictability and high VOB had inhibitory control outcomes closer to those of infants who experienced low maternal unpredictability, suggesting VOB strategy might buffer against the effects of high maternal unpredictability. In participants with metagenomic data (n=93), VOB was associated with taxonomic and functional gut microbial profiles along a Bifidobacterium breve to Bifidobacterium longum axis. Neuroactive gene-set enrichment analysis linked VOB to increase in tryptophan synthesis and glutamate synthesis genes. In contrast, maternal unpredictability showed depletions of GABA and tryptophan synthesis in the unique-effects model and, when VOB and the maternal unpredictability by VOB term were included, enrichment of acetate synthesis and quinolinic acid degradation. Notably, the maternal unpredictability by VOB interactions for tryptophan and glutamate were negative, indicating that the VOB-pathway coupling attenuates as unpredictability increases. Together, these findings support a framework in which maternal unpredictability is the environmental challenge, infant VOB expresses the behavioral strategy, and microbial metabolism modulates whether that strategy is biochemically feasible. TeaserInfant gut microbiome is linked to infant behavioral responses to maternal unpredictability, which in turn impacts how they learn to control their actions.

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Amso, D., Bottino, G. F., Forest, T. A., Bonham, K. S., Zieff, M., Patel, F., Miles, M., Herr, D., Espinoza-Heredia, C., D'Amato, C., Ren, J., Goldstone, M., Mbale, E., Alexander, D. C., Jones, D. K., Williams, S. C., Fifer, W. P., Gabard-Durnam, L., Klepac-Ceraj, V., Donald, K. A.. 2025-12-08. Microbiome-behavior coupling shapes infant adaptation to early maternal unpredictability. https://doi.org/10.64898/2025.12.03.692149

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