A/T/N polygenic risk score for cognitive decline in old age

Moore, A. M.; Filshtein, T. J.; Dumitrescu, L.; Harrati, A.; Elahi, F.; Mormino, E. C.; Deming, Y.; Kunkle, B. W.; Mungas, D. M.; Hedden, T.; Apostolova, L. G.; Saykin, A. J.; Chasioti, D.; Lu, Q.; Dennis, J.; Sealock, J.; Davis, L. K.; Fardo, D. W.; Buckley, R.; Hohman, T. J.

doi:10.1101/838847

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bioRxiv · 10.1101/838847

A/T/N polygenic risk score for cognitive decline in old age

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Abstract

INTRODUCTIONWe developed a novel polygenic risk score (PRS) based on the A/T/N (amyloid plaques (A), phosphorylated tau tangles (T), and neurodegeneration (N)) framework and compared a PRS based on clinical AD diagnosis to assess which was a better predictor of cognitive decline. METHODSWe used summary statistics from genome wide association studies of cerebrospinal fluid amyloid-{beta} (A{beta}42) and phosphorylated-tau (ptau181), left hippocampal volume (LHIPV), and late-onset AD dementia to calculate PRS for 1181 participants in the Alzheimers Disease Neuroimaging Initiative (ADNI). Individual PRS were averaged to generate a composite A/T/N PRS. We assessed the association of PRS with baseline and longitudinal cognitive composites of executive function and memory. RESULTSThe A/T/N PRS showed superior predictive performance on AD biomarkers and executive function decline compared to the clinical AD PRS. DISCUSSIONResults suggest that integration of genetic risk across AD biomarkers may improve prediction of disease progression. Research in ContextO_ST_ABSSystematic ReviewC_ST_ABSAuthors reviewed relevant literature using PubMed and Google Scholar. Key studies that generated and validated polygenic risk scores (PRS) for clinical and pathologic AD were cited. PRS scores have been increasingly used in the literature but clinical utility continues to be questioned. InterpretationIn the current research landscape concerning PRS clinical utility in the AD space, there is room for model improvement and our hypothesis was that a PRS with integrated risk for AD biomarkers could yield a better model for cognitive decline. Future DirectionsThis study serves as proof-of-concept that encourages future study of integrated PRS across disease markers and utility in taking an A/T/N (amyloidosis, tauopathy and neurodegeneration) focused approach to genetic risk for cognitive decline and AD.

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Moore, A. M., Filshtein, T. J., Dumitrescu, L., Harrati, A., Elahi, F., Mormino, E. C., Deming, Y., Kunkle, B. W., Mungas, D. M., Hedden, T., Apostolova, L. G., Saykin, A. J., Chasioti, D., Lu, Q., Dennis, J., Sealock, J., Davis, L. K., Fardo, D. W., Buckley, R., Hohman, T. J.. 2019-11-12. A/T/N polygenic risk score for cognitive decline in old age. https://doi.org/10.1101/838847

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