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bioRxiv · 10.1101/811869

CellProfiler: A fit tool for image analysis in droplet microfluidics

Bartkova, S.·Vendelin, M.·Sanka, I.·Pata, P.·Scheler, O.
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Abstract

Droplet microfluidic assays are rapidly gaining popularity as the result of the ability to manipulate and monitor single biological molecules, individual cells or small populations of bacteria in pico- and nanoliter droplets, with high sensitivity, precision and accuracy in a high-throughput manner. Nonetheless, there is a demand for user-friendly and low-cost droplet analysis technology. In this article we meet this demand with free open-source software CellProfiler (CP). To illustrate the competence of CP as a droplet analysis tool, we show droplet digital quantification of viable fluorescent bacteria.

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Bartkova, S., Vendelin, M., Sanka, I., Pata, P., Scheler, O.. 2019-10-21. CellProfiler: A fit tool for image analysis in droplet microfluidics. https://doi.org/10.1101/811869

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