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bioRxiv · 10.1101/769679

SimBSI: An open-source Simulink library for developingclosed-loop brain signal interfaces in animals and humans

Ojeda, A.·Buscher, N.·Balasubramani, P.·Maric, V.·Ramanathan, D.·Mishra, J.
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Abstract

ObjectiveA promising application of BCI technology is in the development of personalized therapies that can target neural circuits linked to mental or physical disabilities. Typical BCIs, however, offer limited value due to simplistic designs and poor understanding of the conditions being treated. Building BCIs on more solid grounds may require the characterization of the brain dynamics supporting cognition and behavior at multiple scales, from single-cell and local field potential (LFP) recordings in animals to non-invasive electroencephalography (EEG) in humans. Despite recent efforts, a unifying software framework to support closed-loop studies in both animals and humans, is still lacking. The objective of this paper is to develop such a neurotechnology software framework.\n\nApproachHere we develop the Simulink for Brain Signal Interfaces library (SimBSI). Simulink is a mature graphical programming environment within MATLAB that has gained traction for processing electrophysiological data. SimBSI adds to this ecosystem: 1) advanced human EEG source imaging, 2) cross-species multimodal data acquisition based on the Lab Streaming Layer library, and 3) a graphical experimental design platform.\n\nMain resultsWe used several examples to demonstrate the capabilities of the library, ranging from simple signal processing, to online EEG source imaging, cognitive task design, and closed-loop neuromodulation. We further demonstrate the simplicity of developing a sophisticated experimental environment for rodents within this environment.\n\nSignificanceWith the SimBSI library we hope to aid BCI practitioners of dissimilar backgrounds in the development of, much needed, single and cross-species closed-loop neuroscientific experiments. These experiments may provide the necessary mechanistic data for BCIs to become effective therapeutic tools.

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Ojeda, A., Buscher, N., Balasubramani, P., Maric, V., Ramanathan, D., Mishra, J.. 2019-09-14. SimBSI: An open-source Simulink library for developingclosed-loop brain signal interfaces in animals and humans. https://doi.org/10.1101/769679

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