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bioRxiv · 10.1101/724922

WT and A53T α-synuclein systems: Melting Diagram and its new interpretation

Bokor, M.·Tantos, A.·Tompa, P.·Han, K.-H.·Tompa, K.
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Abstract

Parkinsons disease is connected with abnormal -synuclein (S) aggregation. Energetics of potential barriers governing motions of hydration water is examined. Information about the distributions and heights of potential barriers is gained by a thermodynamical approach. The ratios of the heterogeneous water-binding interfaces measure proteins structural disorder. All S forms possess secondary structural elements though they are intrinsically disordered. Monomers are functional at the lowest potential barriers, where mobile hydration water exists, with monolayer coverage of mobile hydration. The S monomer contains 33% secondary structure and is more compact than a random coil. A53T S monomer has a more open structure than the wild type. Monomers realize all possible hydrogen bonds. Half of the mobile hydration water amount for monomers is missing in S oligomers and S amyloids. Oligomers are ordered by 66%. Mobile water molecules in the first hydration shell of amyloids are the weakest bound compared to other forms. Wild type and A53T amyloids show identical, low-level hydration, and are considered as disordered to 75%.\n\nStatement of SignificanceAggregation of -synuclein into oligomers, amyloid fibrils is a hallmark of Parkinsons disease. A thermodynamic approach provides information on the heterogeneity of protein-water bonds in the wild type and A53T mutant monomers, oligomers, amyloids. This information can be related to ratios of heterogeneous water-binding interfaces, which measure the proteins structural disorder. Both -synuclein monomers are intrinsically disordered. The monomers nevertheless have 33% secondary structure. They are functional as long as mobile water molecules surround them. They realize every possible H-bonds with water. Oligomers are like globular proteins with 66% ordered structure. Amyloids are disordered to 75% and are poorly hydrated with loosely bound water. Their hydration is identical. Oligomers, amyloids have only half as much hydrating mobile water as monomers.

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Bokor, M., Tantos, A., Tompa, P., Han, K.-H., Tompa, K.. 2019-08-04. WT and A53T α-synuclein systems: Melting Diagram and its new interpretation. https://doi.org/10.1101/724922

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