bioRxiv ScienceSearch

bioRxiv · 10.1101/639815

Comparison of EEG source reconstructed functional networks in healthy subjects elicited during visual oddball task

Abstract

In this paper we have reconstructed electroencephalography (EEG) sources using weighted Minimum Norm Estimator (wMNE) for visual oddball experiment to estimate brain functional networks. Secondly we have evaluated the impact of time-frequency decomposition algorithms and scout functions on brain functional networks estimation using phase-locked value (PLV). Lastly, we compared the difference between target stimuli with response (TR) and non-target with no response (NTNR) cases in terms of brain functional connectivity (FC). We acquired the EEG data from 20 healthy participants using 129 channels EEG sensor array for visual oddball experiment. Three scout functions: i) MEAN, ii) MAX and iii) PCA were used to extract the regional time series signals. We transformed the regional time series signals into complex form using two methods: i) Wavelet Transform (WT) and ii) Hilbert Transform (HT). The instantaneous phases were extracted from the complex form of the regional time series signals. The FC was estimated using PLV. The joint capacity of the time-frequency decomposition algorithms/scout functions applied to reconstructed EEG sources was evaluated using two criteria: i) localization index (LI) and ii) R. The difference in FC between TR and NTNR cases was evaluated using these two criteria. Our results show that the WT has higher impact on LI values and it is better than HT in terms of consistency of the results as the standard deviation (SD) of WT is lower. In addition, WT/PCA pair is better than other pairs in terms of consistency as the SD of the pair is lower. This pair is able to estimate the connectivity within parietal region which corresponds to P300 response; although WT/MEAN is also able to do that, However, WT/PCA has lower SD than WT/MEAN. Lastly, the differences in connectivity between TR and NTNR cases over parietal, central, right temporal and limbic regions which correspond to target detection, P300 response and motor response were observed. Therefore, we conclude that the output of the connectivity estimation might be affected by time-frequency decomposition algorithms/scout functions pairs. Among the pairs, WT/PCA yields best results for the visual oddball task. Moreover, TR and NTNR cases are different in terms of estimated functional networks.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Thee, K. W., Nisar, H., Yeap, K. H., Tan, W. M.. 2019-05-15. Comparison of EEG source reconstructed functional networks in healthy subjects elicited during visual oddball task. https://doi.org/10.1101/639815

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

The Unreasonable Effectiveness of Cell Types in Describing Neuronal Physiological Features

Single-cell RNA sequencing (scRNA-seq) captures detailed gene expression profiles at scale, while patch-clamp recordings measure intrinsic neuronal electrophysiological properties. Modeling the relations between these two modalities remains a challenge. Here, we compare how well electrophysiological features can be predicted by traditional transcriptomic cell type classification, representations derived from a foundational model (scGPT) pretrained on large-scale scRNA-seq datasets, ion channel-coding genes, and highly variable genes. Using paired transcriptomic and electrophysiological patch-sequencing data from 495 human neurons from neurosurgical tissue, we find that cluster-level cell type representations consistently outperform highly variable gene selection, ion channel gene selection, and context-enriched scGPT embeddings. Notably, performance varies across model architectures and initializations, and the best results are obtained by combining the outputs of separate cell type and scGPT-based models. Together, these findings suggest that traditional discrete cellular classification is highly effective in predicting physiological features. For maximum performance it can be complemented by pretrained transformer models.

neuroscience

A nonlinear inhibition pathway underlying cortical responses to tuned holographic optogenetic perturbations

Optogenetics enables causal manipulation of cortical activity. Perturbation responses can be counterintuitive due to network interactions, making theory essential for predicting them. Existing approaches often rely on linear approximations, which fail for many biologically relevant perturbations. Here we develop a nonlinear theory of responses to holographic perturbations in cell-type-specific recurrent networks with structured connectivity. We fit a nonlinear model to mouse V1 data, which shows cotuned-ensemble suppression: perturbing spatially clustered neurons with similar preferred orientations yields markedly stronger short-range suppression than perturbing untuned ensembles. We show that cotuned-ensemble suppression arises from a feature-tuned, nonlinear inhibition pathway implicating somatostatin-positive (SST) interneurons. The theory predicts that cotuned ensembles suppress parvalbumin-positive (PV) neurons but facilitate SST neurons, and links the degree of cotuned-ensemble suppression or facilitation to the variance of the SST response. This framework identifies mechanisms by which nonlinear inhibition sculpts cortical dynamics and establishes a predictive basis for targeted optogenetic interventions.

neuroscience

Proteomic signatures of APOE ε4 across human tissues and cell types in Alzheimers disease

The apolipoprotein E {varepsilon}4 (APOE {varepsilon}4) allele is the strongest genetic risk factor for late-onset Alzheimers disease (AD). However, the underlying molecular mechanisms remain unclear. This study included 1691 participants from the Religious Orders Study and Rush Memory and Aging Project (ROSMAP), 1226 participants from the Accelerating Medicines Partnership - Alzheimers Disease (AMP-AD) Diverse Cohorts Study, and 735 participants from the Alzheimers Disease Neuroimaging Initiative (ADNI). To characterise APOE {varepsilon}4 molecular effects, we analysed proteomic data from plasma, cerebrospinal fluid (CSF), and induced pluripotent stem cell (iPSC)-derived astrocytes and neurons, as well as transcriptomic and proteomic data from multiple brain regions. The association of APOE {varepsilon}4 with AD neuropathology was also examined. APOE {varepsilon}4 carriers shared a plasma proteomic signature enriched for immune processes, irrespective of AD diagnosis. A machine learning classifier trained on this signature discriminated APOE {varepsilon}4 carriers from non-carriers in an independent cohort using CSF proteomics. APOE {varepsilon}4 carriage was associated with higher Braak stages and Consortium to Establish a Registry for Alzheimers Disease (CERAD) score. However, only limited APOE {varepsilon}4-associated transcriptomic and proteomic changes were observed in bulk brain tissue, with poor cross-layer concordance. Proteomic analyses of iPSC-derived astrocytes and neurons further revealed cell-type-specific APOE {varepsilon}4-associated changes. APOE {varepsilon}4 is associated with a consistent proteomic signature across plasma and CSF. Its molecular effects in the brain differ across cell types, brain regions and molecular layers. These findings support the need for cell-type-resolved multi-omic studies to elucidate how APOE {varepsilon}4 confers AD risk.

neuroscience