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bioRxiv · 10.1101/614222

CoolBox: a interactive genomic data explorer for Jupyter Notebook

Xu, W.·Lin, D.·Hong, P.·Yi, L.·Tyagi, R.·Li, G.·Cao, G.
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Abstract

SummaryCoolBox is a Python package for interactive genomic data exploration based on Jupyter notebook. It provides a ggplot2-like Application Programming Interface (API) for genomic data visualization, and a Jupyter/ipywidgets based Graphical User Interface (GUI) for interactive data exploration. CoolBox is a versatile multi-omics explorer supporting most types of data formats generated by various sequencing technologies like RNA-Seq, ChIP-Seq, ChIA-PET and Hi-C.\n\nAvailability and implementationCoolBox is purely implemented with Python, and the GUI widget in Jupyter notebook is based on the ipywidgets package. It is open-source and available under GPLv3 license at https://github.com/GangCaoLab/CoolBox.

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Xu, W., Lin, D., Hong, P., Yi, L., Tyagi, R., Li, G., Cao, G.. 2019-04-29. CoolBox: a interactive genomic data explorer for Jupyter Notebook. https://doi.org/10.1101/614222

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