The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates

Elliott, Z. S.; Barry, K. E.; Cox, H. L.; Stoesser, N.; Carroll, J.; Vegesana, K. B.; Kotay, S. M.; Sheppard, A. E.; Wailan, A. M.; Crook, D. W.; Parikh, H.; Mathers, A. J.

doi:10.1101/611970

bioRxiv · 10.1101/611970

The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates

Elliott, Z. S.·Barry, K. E.·Cox, H. L.·Stoesser, N.·Carroll, J.·Vegesana, K. B.·Kotay, S. M.·Sheppard, A. E.·Wailan, A. M.·Crook, D. W.·Parikh, H.·Mathers, A. J.

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Abstract

With multidrug resistant (MDR) Enterobacteriales on the rise, a non-toxic agent with a unique mechanism of action such as fosfomycin seems attractive. However, establishing accurate fosfomycin susceptibility testing for non-E. coli in a clinical microbiology laboratory remains problematic. We evaluated fosfomycin susceptibility by multiple methods with multiple strains and species of KPC-producing clinical isolates collected at a single center between 2008 and 2016. In addition, we assessed the presence of fosfomycin resistance genes from whole genome sequencing (WGS) data using NCBIs AMRFinder and custom HMM search. Susceptibility testing was performed using glucose-6-phosphate supplemented fosfomycin E-Test and Kirby-Bauer disk diffusion (DD) assays, and compared to agar dilution. Clinical Laboratory and Standards Institute (CLSI) breakpoints for E. coli were applied for interpretation. Overall, 63% (60/96) of isolates were susceptible by E-Test, 70% (67/96) by DD, and 88% (84/96) by agar dilution. FosA was detected in 80% (70/88) of previously sequenced isolates, with species-specific associations and alleles, and fosA-positive isolates were associated with higher MIC distributions. Disk potentiation testing was performed using sodium phosphonoformate to inhibit fosA and showed significant increases in the zone diameter of DD testing for isolates that were fosA-positive compared to fosA-negative. The addition of sodium phosphonoformate (PPF) corrected 10/14 (71%) major errors in categorical agreement with agar dilution. Our results indicate that fosA influences the inaccuracy of susceptibility testing by methods readily available in a clinical laboratory when compared to agar dilution. Further research is needed to determine the impact of fosA on clinical outcomes.

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Elliott, Z. S., Barry, K. E., Cox, H. L., Stoesser, N., Carroll, J., Vegesana, K. B., Kotay, S. M., Sheppard, A. E., Wailan, A. M., Crook, D. W., Parikh, H., Mathers, A. J.. 2019-04-18. The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates. https://doi.org/10.1101/611970

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