A Comprehensive Molecular Portrait of Human Urine-derived Renal Progenitor Cells

Rahman, M. S.; Wruck, W.; Spitzhorn, L.-S.; Bohndorf, M.; Martins, S.; Asar, F.; Ncube, A.; Erichsen, L.; Graffmann, N.; Adjaye, J.

doi:10.1101/602417

bioRxiv · 10.1101/602417

A Comprehensive Molecular Portrait of Human Urine-derived Renal Progenitor Cells

Rahman, M. S.·Wruck, W.·Spitzhorn, L.-S.·Bohndorf, M.·Martins, S.·Asar, F.·Ncube, A.·Erichsen, L.·Graffmann, N.·Adjaye, J.

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Abstract

BackgroundHuman urine is now recognised as a non-invasive source of stem cells with regeneration potential. These cells are mesenchymal stem cells but their detailed molecular and cellular identities are poorly defined. Furthermore, unlike the mouse, the gene regulatory network driving self-renewal and differentiation into functional renal cells in vitro remain unresolved.\n\nMethodsWe isolated urine stem cells from 10 individuals from both genders and distinct ages, characterized them as renal progenitor cells and explored the gene regulatory network sustaining self-renewal.\n\nResultsThese cells express pluripotency-associated proteins-TRA-1-60, TRA-1-81, SSEA4, C-KIT and CD133. Expression of pluripotency-associated proteins enabled rapid reprogramming into iPSCs using episomal-based plasmids without pathway perturbations. Transcriptome analysis revealed expression of a plethora of nephrogenesis-related genes such as SIX2, OSR1, CITED1, NPHS2, NPHS1, PAX2, SALL1, AQP2, EYA1, SLC12A1 and UMOD. As expected, the cells transport Albumin by endocytosis. Based on this, we refer to these cells as urine derived renal progenitor cells-UdRPCs. Associated GO-term analysis of UdRPCs and UdRPC-iPSCs underlined their renal identity and functionality. Upon differentiation by WNT activation using the GSK3{beta}-inhibitor (CHIR99021), transcriptome and KEGG pathway analysis revealed upregulation of WNT-associated genes-AXIN2, JUN and NKD1. Protein interaction network identified JUN- a downstream target of the WNT pathway in association with STAT3, ATF2 and MAPK1 as a putative regulator of self-renewal and differentiation in UdRPCs. Furthermore, like pluripotent stem cells, self-renewal is maintained by FGF2-driven TGF{beta}-SMAD2/3 pathway.\n\nConclusionThis in vitro model and the data presented should lay the foundation for studying nephrogenesis in man.\n\nSignificance StatementHuman urine is a non-invasive source of stem cells with regeneration potential. Here, we investigated the cellular and molecular identities, and the gene regulation driving self-renewal and differentiation of these cells in vitro. These cells express pluripotency-associated markers enabling easy reprogramming. Based on the expression of renal associated genes, proteins and functionality, we refer to these cells as urine derived renal progenitor cells-UdRPCs. CHIR99021-induced differentiation of UdRPCs activated WNT-related genes-AXIN2, JUN and NKD1. Protein interaction network identified JUN as a putative regulator of differentiation whereas self-renewal is maintained by FGF2-driven TGF{beta}-SMAD2/3. Our data will enhance understanding of the molecular identities of UdRPCs, and enable the generation of renal disease models in vitro and eventually kidney-associated regenerative therapies.

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Rahman, M. S., Wruck, W., Spitzhorn, L.-S., Bohndorf, M., Martins, S., Asar, F., Ncube, A., Erichsen, L., Graffmann, N., Adjaye, J.. 2019-04-08. A Comprehensive Molecular Portrait of Human Urine-derived Renal Progenitor Cells. https://doi.org/10.1101/602417

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