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bioRxiv · 10.1101/596817

IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis

Chen, Y.-C.·Suresh, A.·Underbayev, C.·Sun, C.·Singh, K.·Seifuddin, F.·Wiestner, A.·Pirooznia, M.
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Abstract

In single-cell RNA-seq analysis, clustering cells into groups and differentiating cell groups by marker genes are two separate steps for investigating cell identity. However, results in clustering greatly affect the ability to differentiate between cell groups. We develop IKAP - an algorithm identifying major cell groups that improves differentiating by tuning parameters for clustering. Using multiple datasets, we demonstrate IKAP improves identification of major cell types and facilitates cell ontology curation.

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Chen, Y.-C., Suresh, A., Underbayev, C., Sun, C., Singh, K., Seifuddin, F., Wiestner, A., Pirooznia, M.. 2019-04-03. IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis. https://doi.org/10.1101/596817

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