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bioRxiv · 10.1101/571174

The protein repertoire in early vertebrate embryogenesis

Peshkin, L.·Lukyanov, A.·Kalocsay, M.·Gage, R. M.·Wang, D.·Pells, T. J.·Karimi, K.·Vize, P. D.·Wuhr, M.·Kirschner, M. W.
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Abstract

We present an unprecedentedly comprehensive characterization of protein dynamics across early development in Xenopus laevis, available immediately via a convenient Web portal. This resource allows interrogation of the protein expression data in conjunction with other data modalities such as genome wide mRNA expression. This study provides detailed data for absolute levels of [~]14K unique Xenopus proteins representing homologues of [~]9K unique human genes - a rich resource for developmental biologists. The purpose of this manuscript is limited to presenting and releasing the data browser.\n\nHighlightsO_LIRelative protein expression from stage IV oocyte, blastula, gastrula, neurula, and early organogenesis\nC_LIO_LIBiological triplicates with confidence intervals on protein expression reflect certainty in dynamic patterns\nC_LIO_LIConvenient time-series Web-browser integrated with the multi-media Xenbase portal\nC_LIO_LIGene-symbol search and multi-gene protein/mRNA juxtaposition capabilities\nC_LI

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Peshkin, L., Lukyanov, A., Kalocsay, M., Gage, R. M., Wang, D., Pells, T. J., Karimi, K., Vize, P. D., Wuhr, M., Kirschner, M. W.. 2019-03-11. The protein repertoire in early vertebrate embryogenesis. https://doi.org/10.1101/571174

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