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bioRxiv · 10.1101/569780

Approach for Semi-Automated Measurement of Fiber Diameter in Murine and Canine Skeletal Muscle

Stevens, C. R.·Sledziona, M.·Moore, T.·Dong, L.·Cheetham, J.
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Abstract

Currently available software tools for automated segmentation and analysis of muscle cross-section images often perform poorly in cases of weak or non-uniform staining conditions. To address these issues, our group has developed the MyoSAT (Myofiber Segmentation and Analysis Tool) image-processing pipeline.\n\nMyoSAT combines several unconventional approaches including advanced background leveling, Perona-Malik anisotropic diffusion filtering, and Stegers line detection algorithm to aid in pre-processing and enhancement of the muscle image. Final segmentation is based upon marker-based watershed segmentation.\n\nValidation tests using collagen V labeled murine and canine muscle tissue demonstrate that MyoSAT can determine mean muscle fiber diameter with an average accuracy of ~97%. The software has been tested to work on full muscle cross-sections and works well even under non-optimal staining conditions.\n\nThe MyoSAT software tool has been implemented as a macro for the freely available ImageJ software platform. This new segmentation tool allows scientists to efficiently analyze large muscle cross-sections for use in research studies and diagnostics.

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Stevens, C. R., Sledziona, M., Moore, T., Dong, L., Cheetham, J.. 2019-03-07. Approach for Semi-Automated Measurement of Fiber Diameter in Murine and Canine Skeletal Muscle. https://doi.org/10.1101/569780

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