YAMB: metagenome binning using nonlinear dimensionality reduction and density-based clustering

Korzhenkov, A.

doi:10.1101/521286

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bioRxiv · 10.1101/521286

YAMB: metagenome binning using nonlinear dimensionality reduction and density-based clustering

Korzhenkov, A.

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Abstract

SummaryYAMB is a novel metagenome binning tool, which uses tetranucletotide composition and average contig coverage and performs t-SNE dimensionality reduction and sequential DBSCAN data clusterization. YAMB provided with metagenomics assembly and reads may be used for straightforward metagenome binning on a recent personal computer running Linux OS.\n\nAvailability and ImplementationSource code of YAMB is freely available on GitHub (https://github.com/laxeye/YAMB), implemented in R, Perl and Bash and supported on Linux.\n\nContactKorzhenkov_AA@nrcki.ru

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Korzhenkov, A.. 2019-01-16. YAMB: metagenome binning using nonlinear dimensionality reduction and density-based clustering. https://doi.org/10.1101/521286

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