The human secretome - the proteins secreted from human cells

Uhlen, M.; Tegel, H.; Sivertsson, A.; Kuo, C.-C.; Gutierrez, J. M.; Lewis, N. E.; Forsström, B.; Dannemeyer, M.; Fagerberg, L.; Malm, M.; Vunk, H.; Edfors, F.; Hober, A.; Sjöstedt, E.; Kotol, D.; Mulder, J.; Mardinoglu, A.; Schwenk, J. M.; Nilsson, P.; Zwahlen, M.; Ottosson Takanen, J.; von Feilitzen, K.; Stadler, C.; Lindskog, C.; Ponten, F.; Nielsen, J.; Palsson, B. O.; Volk, A.-L.; Lundqvist, M.; Berling, A.; Svensson, A.-S.; Kanje, S.; Enstedt, H.; Afshari, D.; Ekblad, S.; Scheffel, J.; Katona, B.; Vuu, J.; Lindström, E.; Xu, L.; Mihai, R.; Bremer, L.; Westin, M.; Muse, M.; Mayr, L. M.

doi:10.1101/465815

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bioRxiv · 10.1101/465815

The human secretome - the proteins secreted from human cells

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Abstract

The proteins secreted by human tissues (the secretome) are important for the basic understanding of human biology, but also for identification of potential targets for future diagnosis and therapy. Here, we present an annotation of all predicted secreted proteins (n=2,623) with information about their spatial distribution in the human body. A high-throughput mammalian cell factory was established to create a resource of recombinant full-length proteins. This resource was used for phenotypic assays involving {beta}-cell dedifferentiation and for development of targeted proteomics assays. A comparison between host cells, including omics analysis, shows that many of the proteins that failed to be generated in CHO cells could be rescued in human HEK293 cells. In conclusion, the human secretome has been mapped and characterized to facilitate further exploration of the human secretome.

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Uhlen, M., Tegel, H., Sivertsson, A., Kuo, C.-C., Gutierrez, J. M., Lewis, N. E., Forsström, B., Dannemeyer, M., Fagerberg, L., Malm, M., Vunk, H., Edfors, F., Hober, A., Sjöstedt, E., Kotol, D., Mulder, J., Mardinoglu, A., Schwenk, J. M., Nilsson, P., Zwahlen, M., Ottosson Takanen, J., von Feilitzen, K., Stadler, C., Lindskog, C., Ponten, F., Nielsen, J., Palsson, B. O., Volk, A.-L., Lundqvist, M., Berling, A., Svensson, A.-S., Kanje, S., Enstedt, H., Afshari, D., Ekblad, S., Scheffel, J., Katona, B., Vuu, J., Lindström, E., Xu, L., Mihai, R., Bremer, L., Westin, M., Muse, M., Mayr, L. M.. 2018-11-26. The human secretome - the proteins secreted from human cells. https://doi.org/10.1101/465815

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